Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., nitrogen regulation protein NR(I) (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  295 bits (756), Expect = 2e-84
 Identities = 178/471 (37%), Positives = 255/471 (54%), Gaps = 40/471 (8%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++ + A L+   FA+ E    A++    P VIVSDI +PG  G  
Sbjct: 7   VWILDDDSSIRWVLEKALQGAKLSTASFAAAESLWQALEISQ-PRVIVSDIRMPGTDGLT 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +      +PVI++T H D+  AV A   GA++++ KPF  +  I  V RA     L
Sbjct: 66  LLERLQIHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVERA-----L 120

Query: 124 TLENRQLKRSL-KVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           T    Q    + + +Q   P IIGE  A+Q +   I +++ +   +L+ G++GTGKELVA
Sbjct: 121 THATEQSPTPVAQETQVKTPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVA 180

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
            +LH+ S R+++ F+A+N  A+P++LIESEL+GHEKGAFTGA + R G+FE A GGTLFL
Sbjct: 181 GALHKHSPRKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAANVRQGRFEQANGGTLFL 240

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  MP+  Q RLLRVL +    R+G +  + +D+R+IAAT  DL+Q   +G FR+DL+
Sbjct: 241 DEIGDMPLDVQTRLLRVLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLF 300

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           +RLN++ + +PPL +RREDIP L  HFL  AA   G  A  LT      L    WPGNVR
Sbjct: 301 HRLNVIRIHLPPLSQRREDIPQLASHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVR 360

Query: 363 ELRNAAERYVLLGKLAQFAESHEPKSKLLG------------------------------ 392
           +L N      ++    +      P   L                                
Sbjct: 361 QLENTCRWLTVMASGQEILPQDLPPELLKEPTSINPMAKGSQDWQSALTEWIDQKLSEGN 420

Query: 393 ---LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
              L E    FE+ LLE  L    G  +   +RL   R TL  K+++  +D
Sbjct: 421 SDLLTEVQPAFERILLETALRHTQGHKQEAAKRLGWGRNTLTRKLKELSMD 471