Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., flagellar regulatory protein C (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  298 bits (764), Expect = 2e-85
 Identities = 182/457 (39%), Positives = 264/457 (57%), Gaps = 50/457 (10%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + L++D++ +R AL  +  LA  +    AS EEA+LA+K     LVI SD+ +PG+ G  
Sbjct: 6   LLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQHQFDLVI-SDVQMPGIGGLG 64

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL+ +     +LPV+L+T +  I  AV A+  GA D++ KPFAPE L++           
Sbjct: 65  LLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN----------- 113

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQ-VADTQADILLFGETGTGKELVA 182
                Q+ R L + Q     ++ +  ++  L  ++AQ VA + A +++ G +G+GKE++A
Sbjct: 114 -----QVSRYLPLKQNRDQPVVADEKSLSLL--SLAQRVAASDASVMILGPSGSGKEVLA 166

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R +H+ SSR E+ FVAINC A+PEN++E+ L+G+EKGAFTGA     GKFE AQGGTL L
Sbjct: 167 RYIHQHSSRAEEAFVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLL 226

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  M +  Q +LLRVLQER +ER+G  + I LD+RV+A +  DLK   A G+FR+DLY
Sbjct: 227 DEISEMDLGLQAKLLRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAVVAAGQFREDLY 286

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDV--------QSLLS 354
           YR+N+  LT P L +R  DI  L  H L        K A AL   D+        + LLS
Sbjct: 287 YRINVFPLTWPALNQRPADILPLARHLLT-------KHAKALNVVDLPEFDDAACRRLLS 339

Query: 355 HDWPGNVRELRNAAERYVLLGKLAQF---------------AESHEPKSKLLGLNEQVAE 399
           H WPGNVREL N  +R ++L   A                 ++  E  S+  GL E++  
Sbjct: 340 HRWPGNVRELDNVVQRALILRAGALITANDIIIDAQDVPLTSDDAEYMSEPEGLGEELKA 399

Query: 400 FEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK 436
            E  ++ +TL++C GS K   E+L +  +TL  KM +
Sbjct: 400 QEHVIILETLVQCQGSRKLVAEKLGISARTLRYKMAR 436