Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  294 bits (752), Expect = 5e-84
 Identities = 155/383 (40%), Positives = 240/383 (62%), Gaps = 16/383 (4%)

Query: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLS 60
           M  + ++DD+  +R +  +   +   + +  +S E+ L  ++ + LP  ++ D+ +PG++
Sbjct: 1   MAKILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREE-LPECVIMDVRMPGMN 59

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           G + L ++   D+ LPVI++T +     A++A   GA+D+I KPF    ++  + +A+E 
Sbjct: 60  GLDALKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEA 119

Query: 121 RRLTLENRQLKRSLKVSQTLGP-------RIIGETAAIQTLRDTIAQVADTQADILLFGE 173
            R        +   +V+ T  P        ++G + A+  +   I + A T A +L+ GE
Sbjct: 120 GR--------RMRGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGE 171

Query: 174 TGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFE 233
           +GTGKELVAR++++ S R E+ ++ INC A+P+ L+ESEL+G+EKGAFTGA  RRVGK E
Sbjct: 172 SGTGKELVARAIYQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIE 231

Query: 234 HAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAA 293
            A GGT+FLDEI  MP+  Q +LLR+LQER IER+G  E IP+D+R+IAAT  DL+ A A
Sbjct: 232 QASGGTVFLDEIGDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVA 291

Query: 294 EGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLL 353
           +G+FR+DLYYRL +VTL +PPLRERREDIP L   FL   A         ++   +  + 
Sbjct: 292 DGRFREDLYYRLKVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYME 351

Query: 354 SHDWPGNVRELRNAAERYVLLGK 376
           +H WPGNVREL NA ++ ++  +
Sbjct: 352 AHPWPGNVRELGNAIQKALVFNR 374