Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  321 bits (822), Expect = 4e-92
 Identities = 191/464 (41%), Positives = 263/464 (56%), Gaps = 33/464 (7%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVE-EALLAIKAQGLPLVIVSDICLPGLSGQ 62
           + +IDDE DIR +L    E  D   +   + + EA L   A   P V+  DI +PG+ G 
Sbjct: 5   ILIIDDEDDIRFSLRGILE--DEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGL 62

Query: 63  NLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRR 122
            +L  +      LPVI+I+GHG I  AV A+  GA+DFIEKP + E+++    RA+E R 
Sbjct: 63  TVLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMRE 122

Query: 123 LTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVA 182
           L  EN+ L+ SL         +IGE+A ++ +R+ IA+VA T A +L+ GE GTGKEL A
Sbjct: 123 LRRENQALRSSLGAGSK-ADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAA 181

Query: 183 RSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFL 242
           R++H  S R  +  VA+NC A+PE LIESEL+GHEKGAFTGA+S R GKFE A  GTLFL
Sbjct: 182 RAVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFL 241

Query: 243 DEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLY 302
           DEI  M ++ Q ++LR+LQE+  E++G    I +D+RV+AAT  +L++  A+G FR+DLY
Sbjct: 242 DEIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLY 301

Query: 303 YRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVR 362
           YRL +  L++P LRER +DI  L   F+L     +  A    T      LL + WPGNVR
Sbjct: 302 YRLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVR 361

Query: 363 ELRNAAERYVLL---------------------------GKLAQFAES--HEPKSKLLGL 393
           ELRN  ER ++L                           G  AQ A +        +L  
Sbjct: 362 ELRNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDF 421

Query: 394 NEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKY 437
                 FE   L + L ECGG++    ER+ L R  L+ K++ Y
Sbjct: 422 KAARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGY 465