Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  307 bits (786), Expect = 5e-88
 Identities = 172/462 (37%), Positives = 272/462 (58%), Gaps = 22/462 (4%)

Query: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLS 60
           M  + +IDDE   R+ +    E    +     S EE L  +  + + +V++ D+ +PG+ 
Sbjct: 1   MKHLLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHEQVHVVLL-DMRMPGMD 59

Query: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120
           GQ  L+ +L     LPV+++T +G +  AV+AM  GA+D++ KP   E L+  + +A E 
Sbjct: 60  GQETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEH 119

Query: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180
           RRL +EN +L++    +    P ++G +  +  +RD I Q   ++A +L+ GE+GTGKEL
Sbjct: 120 RRLVVENEELRKRYVENDPTAP-LVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKEL 178

Query: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240
           +A++LH+ S+R  Q  V +NC A+P +L+ESEL+G+ +GAFTGA   + G+F+ A+GGTL
Sbjct: 179 IAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTL 238

Query: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300
           FLDEI  +P++ Q +LLRVLQERV+E +G    + +D+R+IAAT  DL++  A+G FR+D
Sbjct: 239 FLDEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFRED 298

Query: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360
           LY+RLN++ +  PPLR+R ED+P L    L     +  K+   ++A   ++L  H WPGN
Sbjct: 299 LYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGN 358

Query: 361 VRELRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVA-------------------EFE 401
           VREL N  ER ++L +    +    P  +L G   QVA                   E E
Sbjct: 359 VRELENVLERALILSRTDSLSADALP-PQLFGDEPQVADMQQERPVVDDDSRPCSLDEAE 417

Query: 402 KSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLDKES 443
           K  L + L   GG  + T + L + R+TL  K++K+ L + +
Sbjct: 418 KGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTRRA 459