Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  417 bits (1071), Expect = e-121
 Identities = 215/441 (48%), Positives = 303/441 (68%), Gaps = 4/441 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           +  +DDE  +R A AQ+ +LA+ +   FA  E AL  I A+  P ++V+DI +PG+ G  
Sbjct: 8   ILFVDDEEPLRHAAAQTLQLAEFDVACFAEAEAALPRI-ARDFPGILVTDIRMPGMDGTT 66

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           L++  L  D E PVIL+TGHGD+ +AV++M DGAYDF+EKP+AP RL+ +V RA++KRRL
Sbjct: 67  LMARALEIDPEFPVILVTGHGDVDLAVQSMRDGAYDFLEKPYAPSRLVASVRRALDKRRL 126

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           TL+NRQL+ ++     +  R+ G +A +  LR  +  VA T AD+L+ G+TGTGKE+ AR
Sbjct: 127 TLDNRQLRAAMGRRDPVEARLTGRSAVMVALRQQLRAVAGTDADVLIVGDTGTGKEVAAR 186

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH  S+R    F  INC A+P +LIESEL+GHE GA+ GA   R GKFE A+GGT+FLD
Sbjct: 187 ALHRASTRSTGPFQHINCAALPADLIESELFGHEAGAYPGAMRARFGKFEAARGGTVFLD 246

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI+S+P+  Q +LL  +Q R + R+GSN+ + LDIR +AA+K DL+  AA  +FR DL Y
Sbjct: 247 EIDSLPLPLQAKLLHAIQNRTVTRLGSNDPVHLDIRFVAASKKDLEAEAAAERFRADLLY 306

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VT+ +PPL ERREDIP LF      AAARY + A  ++ + + +L + DWPGNVRE
Sbjct: 307 RLNVVTVGLPPLAERREDIPLLFAQLATEAAARYKQPAPEISGAILTALAARDWPGNVRE 366

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423
           LRNAA+RYVL   LA    ++  +   +GL E++A  EK+L+  +L   GG +K T   L
Sbjct: 367 LRNAADRYVLGLDLAL---TNTAEGASMGLAERMAAHEKALIAASLAAHGGRLKDTYAAL 423

Query: 424 HLPRKTLYDKMQKYQLDKESY 444
           +L RK LY+KMQK+ L ++++
Sbjct: 424 NLSRKALYEKMQKHGLSRDTF 444