Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  293 bits (750), Expect = 7e-84
 Identities = 179/452 (39%), Positives = 256/452 (56%), Gaps = 29/452 (6%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           + ++DDE D+R +++Q   L+  + + +AS EEAL  I+A G P +++SDI +PG+ G  
Sbjct: 7   IAIVDDEQDMRQSISQWLALSGYDTETYASAEEALKGIEA-GYPGIVLSDIKMPGMDGMA 65

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  ++  DS LPVI+ITGHGD+ MAV+AM  GA+DF+EKPF P+R+     RA + RRL
Sbjct: 66  LLKRLMSMDSALPVIMITGHGDVPMAVEAMRLGAFDFLEKPFNPDRMSALAKRASDTRRL 125

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           TLENR L+R L     L  ++IG + A+  LR+ I  +      +L+ GETGTGK LVA 
Sbjct: 126 TLENRALRRELGDGTVLMRKLIGASPAMARLREDILDLGQADGHVLIDGETGTGKTLVAH 185

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH    R  + FV  +C AV +  +E  L+G         +   +   E A+ GTL L+
Sbjct: 186 ALHAVGPRAGKPFVVQSCAAVDD--LEKRLFG------PAEEGMPLPLVEQARSGTLCLE 237

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           +IE+MP + Q RLL  L         ++    ++ R+IA   +       E + R DL+Y
Sbjct: 238 DIEAMPSEVQARLLGQL---------NDTSAGIETRIIAICNLAEDGKTIEDRLRPDLFY 288

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RL  + +T+PPLR+R EDI  LF H+  +    YG  A  + A +   LL   WPGNVR+
Sbjct: 289 RLAAMRITLPPLRQRGEDILTLFSHYADMFCEEYGCDAPQVAAQEAAQLLQAPWPGNVRQ 348

Query: 364 LRNAAERYVLLGKLAQ-------FAESHE--PKSKLLG--LNEQVAEFEKSLLEQTLIEC 412
           L N AER VL  +           A++ E  P     G  L E V  FE+ L++ T+   
Sbjct: 349 LINVAERAVLQNRRGSGSITSLLMADNAEMGPAITTEGKPLKEYVEAFERMLIDNTMRRH 408

Query: 413 GGSIKATMERLHLPRKTLYDKMQKYQLDKESY 444
            GSI A ME L LPR+TL +KM KY L + +Y
Sbjct: 409 KGSIAAVMEELCLPRRTLNEKMAKYGLSRANY 440