Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  484 bits (1246), Expect = e-141
 Identities = 255/444 (57%), Positives = 318/444 (71%), Gaps = 4/444 (0%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V +IDDE  I   L Q FEL  + A F  +  + +  +  +    V++SD+ +P L G +
Sbjct: 12  VLIIDDEPHIGTVLVQLFELEGIKA-FATTDPKGIAKLLDRDWAGVVISDVNMPQLDGIS 70

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           L+  +  QD +LPV+L+TG GDI+MAV A+  GAYDF+EKPF  E ++D V RA++KR L
Sbjct: 71  LMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSL 130

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
           TLENR+LK+ L+     GPRI+G +  I  +R  I QV DT AD+L+ GETGTGKELVAR
Sbjct: 131 TLENRKLKKELESHNVPGPRILGHSVGILRMRHIIDQVIDTPADVLIEGETGTGKELVAR 190

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
            LH+ SSR + NFVAINCGA+PENLIESEL+G E GAFTG D  R+GKFE+A GGTLFLD
Sbjct: 191 YLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGGTLFLD 250

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EIES P+  Q++LLRVL++R +ER+GSN+ I LDIRVIAATK+DLK     G+FRQDL Y
Sbjct: 251 EIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGEFRQDLLY 310

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN+VT+ IPPLR+RREDIP LF HF  +A+ARY KA  AL A     L SHDWPGNVRE
Sbjct: 311 RLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWPGNVRE 370

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKL---LGLNEQVAEFEKSLLEQTLIECGGSIKATM 420
           LRN AERYVLLG  A FA S      L   + L ++V  FE+ L+E+ L    GSIK TM
Sbjct: 371 LRNLAERYVLLGGEAAFAGSLGNAPSLHTSMSLLQRVEFFERVLIEEALSHNKGSIKQTM 430

Query: 421 ERLHLPRKTLYDKMQKYQLDKESY 444
           E+L LPRKTLYDKM+KY LD++ Y
Sbjct: 431 EQLELPRKTLYDKMRKYDLDRKQY 454