Pairwise Alignments

Query, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella sp. ANA-3

 Score =  295 bits (756), Expect = 2e-84
 Identities = 175/470 (37%), Positives = 255/470 (54%), Gaps = 38/470 (8%)

Query: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63
           V+++DD+S IR  L ++ + A L+   FA+ E    A++    P VIVSDI +PG  G  
Sbjct: 5   VWILDDDSSIRWVLEKALQGAKLSTASFAAAESLWQALEISQ-PRVIVSDIRMPGTDGLT 63

Query: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123
           LL  +      +PVI++T H D+  AV A   GA++++ KPF  +  I  V RA+     
Sbjct: 64  LLERLQIHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAISLVERALTHAT- 122

Query: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183
               +    + + +Q   P IIGE  A+Q +   I +++ +   +L+ G++GTGKELVA 
Sbjct: 123 ---EQSPAPAAQETQVKTPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAG 179

Query: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243
           +LH+ S R+++ F+A+N  A+P++LIESEL+GHEKGAFTGA + R G+FE A GGTLFLD
Sbjct: 180 ALHKHSPRKDKPFIALNMAAIPKDLIESELFGHEKGAFTGAANVRQGRFEQANGGTLFLD 239

Query: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303
           EI  MP+  Q RLLRVL +    R+G +  + +D+R+IAAT  DL+Q   +G FR+DL++
Sbjct: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFH 299

Query: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363
           RLN++ + +PPL +RREDIP L  HFL  AA   G  A  LT      L    WPGNVR+
Sbjct: 300 RLNVIRVHLPPLSQRREDIPQLATHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQ 359

Query: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLG------------------------------- 392
           L N      ++    +      P+  L                                 
Sbjct: 360 LENTCRWLTVMASGQEILPQDLPQELLKEPASINPMAKGSQDWQSALTEWIDQKLSEGNS 419

Query: 393 --LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440
             L E    FE+ LLE  L    G  +   +RL   R TL  K+++  +D
Sbjct: 420 DLLTEVQPAFERILLETALRHTQGHKQEAAKRLGWGRNTLTRKLKELSMD 469