Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., putative two-component sensor histidine kinase protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  319 bits (818), Expect = 2e-91
 Identities = 203/595 (34%), Positives = 333/595 (55%), Gaps = 24/595 (4%)

Query: 6   RLSLMLWVMFIVLVSMSTHLYWRFQYQALLNEHQSQLDRFSSHIVATLDKYAHIPHLISK 65
           R +L+  V  + ++ ++   + R     L +  ++QL    S +   L ++  IPH++S 
Sbjct: 12  RYTLLALVGLVGVLYLTWSWHVRSGVSDLADTSRAQLGELVSLLDGMLSRFETIPHVLST 71

Query: 66  DKELVDALLSAQNSAQIDITNRYLEQVNEVIQAADTYLIDRFGNTIASSNWNLDRSFIGR 125
           +  L D LL+ ++  ++   N+YLE++  + +A+D YLID  G  +A+SNW    SF+G+
Sbjct: 72  NPMLADTLLNQRDMDKVHRLNKYLEELRHITEASDIYLIDALGVAVAASNWQQSYSFVGQ 131

Query: 126 NFAWRPYFYLSIAGQKSQYFALGSTSGQRGYYYAYPVIYAAEILGVIVVKMDLSAIE--- 182
           ++++RPYF  +IAG++  Y+A+G+ S +RGYY+++PV  +  +LG IVVK+D+  IE   
Sbjct: 132 DYSFRPYFTEAIAGRQGNYYAVGTASDKRGYYFSFPVEDSGTVLGAIVVKLDVLDIETQA 191

Query: 183 QGWQSKSSY-FVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDIRQSQQYLDSPIPSL-- 239
            G      Y F+ TD   +VF S++  W   S+   + ++   +  S++Y    I  L  
Sbjct: 192 SGVAQAGQYDFIITDPDNIVFASNRAEWRLTSLGPFTDSKRYALNASKRYAKRQITELDI 251

Query: 240 --GWQGDLQAEQSEWRKPEKHWLQDDYIVSSRPLPELALTIRVLSPKIELFWSAFGLVII 297
              ++G  +   +   +        DY+ +S  + +    + VL+P   ++ S   ++++
Sbjct: 252 HPAYKGVTEGVNA--YRIGSGLKAADYLDTSTAMIKAGWRVHVLTPLAPVYSSLSQVLLL 309

Query: 298 LCMLFAIVYLGFQLWHHRQLRQRQIEQLQQETKQKLEFEVMERTAKLHAEIAERIKTEHA 357
               + ++ L   L    Q  +R      Q+++ +LE  V ERTA+L A   +       
Sbjct: 310 SATCYGLLLLFTLL----QRERRHSLARMQQSRDELEQRVKERTAELEAANTQ------- 358

Query: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417
           L+ TQDELIQAAKL V+G MSASI+HELN PLAAIRS+  N + FL  + P RA ENL+ 
Sbjct: 359 LKDTQDELIQAAKLTVVGTMSASINHELNQPLAAIRSYTQNTQTFLERDMPGRARENLAI 418

Query: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477
           I  LT+R+A I  Q KSF RKS   +   V L   +  A  ++  +   Q   L +   +
Sbjct: 419 ILELTDRLADIVGQFKSFTRKSQGKDGV-VMLANCLQQALTIVQPELDKQKAQLTIHCED 477

Query: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGIE 537
             + V  +  +L+QVL+NL+TNAL A+     + + I L   +  + + + D+GPGV   
Sbjct: 478 ESLKVWCDGTRLQQVLVNLITNALNAMSQSPVKRLSISLLGGD-PVTIRIQDSGPGVRDS 536

Query: 538 TLPHLFEPFHTT-KKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPRF 591
            +  +FEP++TT ++ GLGLGLSIS++I+ SMQG + VA +P GGA F ITLP +
Sbjct: 537 LMEKIFEPYYTTSERQGLGLGLSISRRIIESMQGDIRVANAPEGGAIFDITLPAY 591