Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  303 bits (777), Expect = 1e-86
 Identities = 201/550 (36%), Positives = 302/550 (54%), Gaps = 16/550 (2%)

Query: 53  LDKYAHIPHLISKDKELVDALLSAQNSAQIDITNRYLEQVNEVIQAADTYLIDRFGNTIA 112
           ++K   +P +++ D +L  AL S ++ A I   N   E +    +A   YL+D  G  IA
Sbjct: 70  IEKQRSLPLVLASDPDLGRALES-RDPAHIAALNEKFETLAAGTRAGVIYLLDLGGVAIA 128

Query: 113 SSNWNLDRSFIGRNFAWRPYFYLSIAGQKSQYFALGSTSGQRGYYYAYPVIYAAEILGVI 172
           +SNW    SF+G ++ +RPYF L++  + +++FALG+ S + G Y A  +  A   LGV+
Sbjct: 129 ASNWRAADSFVGSDYGFRPYFRLALDERATEHFALGTVSHRPGLYIARRIDGARGPLGVL 188

Query: 173 VVKMDLSAIEQGWQSKSSYFVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDIRQSQQYL 232
           VVK++   IE  WQ  +     TD   VV ++S P+W F +    S  +   IR S  + 
Sbjct: 189 VVKVEFETIEAQWQGFAEPTFVTDAQGVVIITSLPSWRFLAEIPKSAEESARIRASLPFE 248

Query: 233 DSPIPSLGWQ-----GDLQAEQSEWRKPEKHWLQDDYIVSSRPLPELALTIRVLSPKIEL 287
            +P+  L  +     G +       R    +  +  +++ + P P  A T+ VL+P    
Sbjct: 249 KAPLTPLPIRRADAVGTVVVALPTSRADRAN--ERPFVLEAGPQPATAWTLHVLAPARVP 306

Query: 288 FWSAFGLVIILCMLFAIVYLGFQLWHHRQLRQRQIEQLQQETKQKLEFEVMERTAKLHA- 346
              A        ML   V  G  LW+ R LR+ +    Q+  + +LE  V ERTA+L + 
Sbjct: 307 AAVAAAARTFALMLSTGVICGSGLWYARSLRRARERGRQRAARIELEERVSERTAELRSA 366

Query: 347 ------EIAERIKTEHALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGR 400
                 EI ER + E AL+  QDEL+QA KLAVLGQ++AS++HE+N P+AAIR+FADN R
Sbjct: 367 NDRLLTEIDERRRAEAALQDLQDELVQARKLAVLGQIAASVAHEINQPVAAIRTFADNAR 426

Query: 401 RFLATNKPERAEENLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELM 460
            FLA  +PE A+ NL  I+ LTER+  I+ +L++FARKS S   + V L   I  A  L+
Sbjct: 427 IFLARAQPEGADHNLQTIATLTERIGAITGELRAFARKSPS-RVEPVSLRSAIDGALLLV 485

Query: 461 TGQFKAQMTLLELCDLETPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSE 520
             + + Q   L +   E  + V    ++LEQVL+NLL NA++AL G+ +  ++I      
Sbjct: 486 GHRLRQQAVTLGVDIAEGDLTVAAERVRLEQVLVNLLQNAVEALAGRRDGTIRIAAIADR 545

Query: 521 QQIALFVDDNGPGVGIETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLG 580
            ++ + V DNGPG+  + +  LF PF TTK  GLGLGL I++ I+    G+ +   +  G
Sbjct: 546 ARVTVTVCDNGPGLSPDVVGSLFMPFTTTKPTGLGLGLVIAKDIIAEFGGSFTGENAASG 605

Query: 581 GARFTITLPR 590
           GARFTITL R
Sbjct: 606 GARFTITLAR 615