Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  118 bits (295), Expect = 7e-31
 Identities = 74/247 (29%), Positives = 131/247 (53%), Gaps = 5/247 (2%)

Query: 347 EIAERIKTEHALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATN 406
           ++ E  +T+  L + Q EL+  ++L  +G+M+++++HELN PL+AI ++    RR LA +
Sbjct: 253 DLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELNQPLSAISNYMKGSRRLLAGS 312

Query: 407 KPE---RAEENLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQ 463
                 + E  + R +    R  +I  +L+ F  +  S ++ +  L  LI  A  L    
Sbjct: 313 TDPNTVKIESAMERAAEQALRAGQIIRRLRDFVARGESEKRVE-SLAKLIEEAGALGLTG 371

Query: 464 FKAQMTLLELCDLETPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQI-RLQTSEQQ 522
            + Q  +L          V V+ +Q++QVL+NL  NAL+A+    ++ +     + ++  
Sbjct: 372 AREQGVVLRFNLDPAHDLVLVDRVQIQQVLVNLFRNALEAMANSDKKELSAGNARVADDM 431

Query: 523 IALFVDDNGPGVGIETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGA 582
           + + V D G G+  +    LF+ F TTK+ G+G+GLSIS+ I+ +  G +   T+  GGA
Sbjct: 432 VEVTVSDTGSGLPEQVKAKLFQTFFTTKETGMGVGLSISRSIIEAHGGRMWAETNSAGGA 491

Query: 583 RFTITLP 589
            F  TLP
Sbjct: 492 TFRFTLP 498