Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  126 bits (317), Expect = 2e-33
 Identities = 82/258 (31%), Positives = 142/258 (55%), Gaps = 7/258 (2%)

Query: 340 RTAKLHAEIAERIKTEHALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNG 399
           R   +  ++ ER +    + +   EL  A +++VLGQ++ASI+HE+N PLAAI ++  +G
Sbjct: 367 RVLLMAVDVTERNEARTKIERISAELAHAGRVSVLGQLAASIAHEVNQPLAAIINYGKSG 426

Query: 400 RRFLA--TNKPERAEENLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAK 457
           +R+L   T+      E L +I +   R A++  +++  ARKS +     V L  ++  A 
Sbjct: 427 KRWLVRPTSDIGEVAECLDKIVSNANRAAEVVGRVRFLARKS-APLTDSVDLVVMLQDAI 485

Query: 458 ELMTGQFKAQMTLLELCDLETPV-WVRVNPIQLEQVLINLLTNALQALEG-QAERVVQIR 515
           EL+  +  +    + + +L TP+  +  + +Q++QV +NLL NALQA+ G    R + +R
Sbjct: 486 ELLRREIHSVKATVRV-ELSTPIAMIDCDRVQVQQVFVNLLMNALQAMRGIDGHRQILVR 544

Query: 516 LQTSEQQIALFVDDNGPGVGIETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVA 575
           ++ S   + + V D G G+  +    +FEPF +TK +G+GLGLSI + I+    G +  +
Sbjct: 545 IEDSGDSLTVAVCDTGVGIAGDP-ARIFEPFFSTKSDGMGLGLSICRTIIEGQGGQILAS 603

Query: 576 TSPLGGARFTITLPRFTP 593
            +   GA    TL R  P
Sbjct: 604 NNDGPGATVAFTLLRNNP 621