Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (326), Expect = 2e-34
 Identities = 93/276 (33%), Positives = 148/276 (53%), Gaps = 7/276 (2%)

Query: 317 LRQRQIEQLQQETKQKLEFEVMERTAKLHAEIAERIKTEHALRQTQDELIQAAKLAVLGQ 376
           L QR+  Q+Q   +Q LE +V ERT  L  +  E  +    L +T+ +L+   KL  LG+
Sbjct: 412 LLQRRNSQIQAAAEQ-LEVKVEERTRSLQEKTEELQRNVALLNETRQQLVTNEKLTALGE 470

Query: 377 MSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSRISALTERMAKISEQLKSFA 436
           ++A I+HE+NNP A I    +  +  L  +K E  EE +  +     R++ I   L  ++
Sbjct: 471 LTAGIAHEINNPTAVILGNMELLKSELG-DKAEDVEEEIDIVIEQVGRISTIIRSLLQYS 529

Query: 437 RKSTSNEQQDV-QLYPLILSAKELMTGQFKAQMTLLELCDLETPVWVRVNPIQLEQVLIN 495
           R    N   ++ QL P++     L+    K Q  +L + DL     + VN  QL QVLIN
Sbjct: 530 RPGEFNAPLEMHQLTPIVEEMAILVRHSIKKQEVVL-IQDLNASYPIEVNRPQLLQVLIN 588

Query: 496 LLTNALQALEGQAERVVQIR--LQTSEQ-QIALFVDDNGPGVGIETLPHLFEPFHTTKKN 552
           L+ NA  A++GQ    ++    +Q  E   + + V+D G G+  E L  +F+PF+TT+++
Sbjct: 589 LVVNAAHAMDGQGRIWIRTYDWVQGGEPIGVKIEVEDEGKGIPEEQLGRIFDPFYTTRQD 648

Query: 553 GLGLGLSISQQILHSMQGTLSVATSPLGGARFTITL 588
           G GLGLS+S  I+  + GT+ V+++   G  FTI L
Sbjct: 649 GTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684