Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  315 bits (808), Expect = 3e-90
 Identities = 201/604 (33%), Positives = 336/604 (55%), Gaps = 40/604 (6%)

Query: 11  LWVMFIVLVSMSTHL---YW---RFQYQALLNEHQSQLDRFSSHIVATLDKYAHIPHLIS 64
           L V FI+L+ ++  L   YW      Y+    +  +Q+    S +  +L +Y  IPH++S
Sbjct: 14  LGVGFIILLGLAFTLRVAYWFHLEHGYEMTRQQSNAQMKELLSFLSGSLSRYESIPHVLS 73

Query: 65  KDKELVDALLSAQNSAQIDITNRYLEQVNEVIQAADTYLIDRFGNTIASSNWNLDRSFIG 124
            +  L  ALL   +   I   NRYLE++  + +A D YL++  G+ IA+SNW    SFIG
Sbjct: 74  TNPLLASALLKQDDPDTITPLNRYLEEIQSITEALDIYLVNIDGDAIAASNWQQSYSFIG 133

Query: 125 RNFAWRPYFYLSIAGQKSQYFALGSTSGQRGYYYAYPVIY----------AAEILGVIVV 174
           +N+A+RPYF  +I G+  +YFA+G++S +RGYY++YP+             A++LG IVV
Sbjct: 134 KNYAFRPYFKDAIEGKMGRYFAVGTSSNKRGYYFSYPIYSHGYPVTPSQGEAKVLGAIVV 193

Query: 175 KMDLSAIEQ---GWQSKSSY-FVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDIRQSQQ 230
           K+D++ IEQ   G    S+Y F  +D   ++F+SS+P W   ++  ++      I  S++
Sbjct: 194 KVDVTEIEQQSTGMARGSNYEFAISDPDHIIFLSSRPEWRLTALTPVTHQLKQRIESSRR 253

Query: 231 YLDSPIPSLG----WQGDLQAEQSEWRKPEKHWLQDDYIVSSRPLPELALTIRVLSPKIE 286
           Y +  I  L     +   L A+   ++  +      +++ ++  + +    + +LSP   
Sbjct: 254 YANREISPLAIEPPFAPSLAADYQIYQIGDDK-RGAEFMDNAAYMSDAGWQVHILSPMTP 312

Query: 287 LFWSAFGLVIILCMLFAIVYLGFQLWHHRQLRQRQIEQLQQETKQKLEFEVMERTAKLHA 346
           ++ S   L+++   L+ +  L         + +R+  +  Q+  ++LE  V ERT     
Sbjct: 313 IYRSLPPLLLLYGALYLLCALALLF----AIEKRKNTRRMQQAHEQLEQRVKERT----- 363

Query: 347 EIAERIKTEH-ALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLAT 405
              + ++T H  L++ QDELIQAAKL V+G +SASI+HE+N PLAAIRS+A N +  L+ 
Sbjct: 364 ---QALETSHQQLKEAQDELIQAAKLTVIGSLSASINHEINQPLAAIRSYAQNTQTLLSR 420

Query: 406 NKPERAEENLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFK 465
            K +    N+  I  LT+R+A I  Q KSF RKS  N++  + +   I  A  ++  +  
Sbjct: 421 AKWDDVSSNIMTIIELTDRLAAIVSQFKSFTRKSQGNDKA-ISVAQCIRDALTIVQPEVD 479

Query: 466 AQMTLLELCDLETPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIAL 525
            Q   L L + E    +  +PI+L+QVLINL++NA+ A+     + + I +  S  ++ +
Sbjct: 480 KQGIDLVLNNTECQTLLWGDPIRLQQVLINLMSNAMVAMRANNPKQLIIGVVVS-NRLEI 538

Query: 526 FVDDNGPGVGIETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFT 585
            ++D G G+    +  +F+P++T+ + GLGLGLSIS++I+ +MQG +SVA    GGA F 
Sbjct: 539 TIEDTGTGIDESQMQKIFDPYYTSSRQGLGLGLSISRRIVEAMQGKISVANRQQGGAIFQ 598

Query: 586 ITLP 589
           ITLP
Sbjct: 599 ITLP 602