Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., hypothetical two-component sensor histidine kinase protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  258 bits (660), Expect = 4e-73
 Identities = 176/535 (32%), Positives = 285/535 (53%), Gaps = 30/535 (5%)

Query: 2   PSIRRLSLMLWVMFIVLVSMSTHLYWRFQYQALLN---EHQSQLDRFSSHIVATLDKYAH 58
           P  ++   M  V+   L ++    YW   YQ  ++   + + QL    S +   L +Y  
Sbjct: 6   PKAKQRLFMTIVLLAGLFAILKLTYWVHFYQGKIDIQQQSEKQLKELVSFLDGALSRYES 65

Query: 59  IPHLISKDKELVDALLSAQNSAQIDITNRYLEQVNEVIQAADTYLIDRFGNTIASSNWNL 118
           IPH++S +  L + L   QN  ++   N YLE++  V +A+D YLID  G  IA+SNW  
Sbjct: 66  IPHVLSTNPMLANVLNDQQNPQKVQELNLYLEEIQHVTEASDIYLIDALGIAIAASNWQQ 125

Query: 119 DRSFIGRNFAWRPYFYLSIAGQKSQYFALGSTSGQRGYYYAYPVIY--AAEILGVIVVKM 176
             SFIG+++++RPY+  +I+G   +Y+A+G++S +RG+Y++YP+       ILG I+VK+
Sbjct: 126 PFSFIGKDYSFRPYYTDAISGNLGRYYAVGTSSDKRGFYFSYPIYQQGGKGILGAIIVKV 185

Query: 177 DLSAIEQGWQSKS------SYFVATDDHQVVFMSSQPAWLFHSVADLSPAQLNDIRQSQQ 230
           D++ IEQ  QS S        F+ +D   +VF+SS   W   S+  L+ A+   +  S++
Sbjct: 186 DIADIEQ--QSTSIAMAGQYQFLISDPDDIVFISSVDEWRLTSLTPLTQAKQYALNASKR 243

Query: 231 YLDSPIPSL----GWQGDLQAEQSEWRKPEKHWLQDDYIVSSRPLPELALTIRVLSPKIE 286
           Y + PI  L     +Q D  +    +   E +  Q  Y+ +   + +    + +L+P   
Sbjct: 244 YAERPIGELIIKPQYQDDSTSSGHIYHIREGN-SQAQYMDTHHLMTKAGWRVHILAPLKP 302

Query: 287 LFWSAFGLVIILCMLFAIVYLGFQLWHHRQLRQRQIEQLQQETKQKLEFEVMERTAKLHA 346
           L  S   L+++   ++ ++ LG  L+   + R  Q  QL Q     LE  V ERT  L  
Sbjct: 303 LHESMPALMLLSASIYLLLALGL-LFSSERRRNLQRMQLAQSL---LEQRVEERTYDLQ- 357

Query: 347 EIAERIKTEHALRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATN 406
                 +    L+ TQDELIQAAKL V+G +SASI+HELN PLAA+RS+A N + FLA N
Sbjct: 358 ------QANDRLKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFLARN 411

Query: 407 KPERAEENLSRISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKA 466
             ++A +NL  I  LT+R+A I  Q KSF RKS   +     L   I  A  ++  +   
Sbjct: 412 MQDKALDNLKIIIELTDRLADIVGQFKSFTRKSQGTDSA-TDLKGCIKQALTIVQPEIDK 470

Query: 467 QMTLLELCDLETPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQ 521
           Q   L++   E    V  + ++L+QV +N+++NA+ A++    R + IR+   ++
Sbjct: 471 QGVELDVLLPEGQYQVWGDKVRLQQVFVNIMSNAIVAMQQSVIRKLSIRVNCQDK 525