Pairwise Alignments

Query, 597 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (315), Expect = 5e-33
 Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 11/278 (3%)

Query: 317 LRQRQIEQLQQETKQKLEFEVMERTAKLHAEIAERIKTEHALRQTQDELIQAAKLAVLGQ 376
           L QR+  Q+Q   +Q LE +V ERT  L  +  E  +    L +T+ +L+   KL  LG+
Sbjct: 412 LLQRRNAQIQAAAEQ-LEMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGE 470

Query: 377 MSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSRISALTERMAKISEQLKSFA 436
           ++A I+HE+NNP A I    +  R  L  +K E  +E +  +     R++ I   L  ++
Sbjct: 471 LTAGIAHEINNPTAVILGNMELLRYELG-DKAEVVKEEIDLVIQQVGRISTIIRSLLQYS 529

Query: 437 RKSTSNEQQDVQ-LYPLILSAKELMTGQFKAQMTLLELCDLETPVWVRVNPIQLEQVLIN 495
           R    N   ++  + P+I     L+    + Q  +L + +L     V+VN  QL QVLIN
Sbjct: 530 RPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVL-ITELNASCPVQVNRPQLLQVLIN 588

Query: 496 LLTNALQALEGQAERVVQIRLQTSEQQ-----IALFVDDNGPGVGIETLPHLFEPFHTTK 550
           L+ NA  A++G+    + +R     QQ     + + V+D G G+  E L  +F+PF+TT+
Sbjct: 589 LVVNAAHAMDGKGR--IWVRTYDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTR 646

Query: 551 KNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITL 588
           K+G GLGLS+S  I+  + GT+ V++    G+ FTI L
Sbjct: 647 KDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684