Pairwise Alignments

Query, 426 a.a., ATP-dependent Clp protease ATP-binding subunit ClpX from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., ATP-dependent protease ATP-binding subunit (RefSeq) from Shewanella loihica PV-4

 Score = 90.9 bits (224), Expect = 7e-23
 Identities = 46/101 (45%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126
           TPR+I   LD ++IGQ++AK+ +A+A+ N ++R++      +  E+   NIL+IGPTG G
Sbjct: 5   TPREIVHELDSHIIGQQNAKRSVAIALRNRWRRMQLDAALRQ--EVTPKNILMIGPTGVG 62

Query: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 167
           KT +A  LA+L   PF   +AT  TE GYVG++VE II+ L
Sbjct: 63  KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDL 103



 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 74/233 (31%), Positives = 101/233 (43%), Gaps = 60/233 (25%)

Query: 179 ERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238
           + GIV++DEIDKI ++ +      DVS EGVQ+ LL L+EG   +       KH      
Sbjct: 247 QHGIVFLDEIDKICKRGDTSG--PDVSREGVQRDLLPLVEGCTVNT------KHGM---- 294

Query: 239 QVDTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLV 298
            V T  ILFI  GAF                                       +P DL 
Sbjct: 295 -VKTDHILFIASGAFQ------------------------------------MSKPSDL- 316

Query: 299 KYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALK 358
               IPE  GRLP+   L  L      +IL EP  +LT+QY AL   E V +EF E  ++
Sbjct: 317 ----IPELQGRLPIRVELEALSANDFKRILTEPHASLTEQYVALMATEGVKVEFSESGIE 372

Query: 359 AIAAKAMK-----RKTGARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406
            IA  A +        GAR L +++E ++ +  +E  S +  S  VID   +N
Sbjct: 373 RIAQAAWQVNERTENIGARRLHTVMERLMEDLSFE-ASDKSGSTTVIDADYVN 424



 Score = 25.0 bits (53), Expect = 0.005
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 126 GKTLLAETLARLL-DVPFTMAD---ATTLTEAGYVGEDVENIIQ 165
           G   L   + RL+ D+ F  +D   +TT+ +A YV   +EN++Q
Sbjct: 389 GARRLHTVMERLMEDLSFEASDKSGSTTVIDADYVNAHLENLVQ 432