Pairwise Alignments

Query, 426 a.a., ATP-dependent Clp protease ATP-binding subunit ClpX from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., ATP-dependent protease ATP-binding subunit HslU (RefSeq) from Shewanella sp. ANA-3

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 67  TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSG 126
           TPR+I   LD ++IGQ+ AK+ +AVA+ N ++R++      +  E+   NIL+IGPTG G
Sbjct: 5   TPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQ--EVTPKNILMIGPTGVG 62

Query: 127 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 167
           KT +A  LA+L + PF   +AT  TE GYVG++VE II+ L
Sbjct: 63  KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDL 103



 Score = 88.2 bits (217), Expect = 5e-22
 Identities = 75/233 (32%), Positives = 102/233 (43%), Gaps = 60/233 (25%)

Query: 179 ERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238
           + GIV++DEIDKI ++ E      DVS EGVQ+ LL L+EG   +       KH      
Sbjct: 248 QHGIVFLDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVTT------KHGM---- 295

Query: 239 QVDTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLV 298
            V T  ILFI  GAF                                       +P DL 
Sbjct: 296 -VKTDHILFIASGAFQ------------------------------------MAKPSDL- 317

Query: 299 KYGLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALK 358
               IPE  GRLP+   L  L      +IL EP  +LT+QY AL   E V +EF E  ++
Sbjct: 318 ----IPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMATEGVTIEFAESGIE 373

Query: 359 AIAAKAMK-----RKTGARGLRSILEAVLLETMYELPSMEEVSKVVIDESVIN 406
           +IA  A +        GAR L +++E ++ +  YE  S +  S  VID   ++
Sbjct: 374 SIAKAAWQVNERTENIGARRLHTVMEKLMEDISYE-ASDKSGSSFVIDADYVS 425