Pairwise Alignments

Query, 786 a.a., endopeptidase La from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., ATP-dependent protease LonB from Methanococcus maripaludis S2

 Score = 83.6 bits (205), Expect = 3e-20
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 43/388 (11%)

Query: 420 LLDEID-----KMSSDMRGDPASALLEVLDPE-QNNSFNDHYLEVDYDLSDVMFVATSNS 473
           LLD ID     K   D   +    LL+ +  E +NN+      E   ++  +  + + + 
Sbjct: 308 LLDRIDYKVVLKNKMDNNQENRDKLLQFIVQELENNNLRPMSYEACCEIVRMAQLLSGSK 367

Query: 474 MNIPGPLLDRMEVIRLS-----GYTEDEKLNIAKDHLVSKQVERNGLKPSEI--VIEDSA 526
             +   L     +I+++     G    E +    +  V  +V    +KP+E     +  A
Sbjct: 368 NKLTLRLRQLSNIIKMANDIATGKELSESIEEMSEKEVKPEVTVKAVKPAEKKNTRKIRA 427

Query: 527 IVGIIRYYTREAGVRGLEREISK--ICRKAVKKILLDKGVKTVVVNQQNLKEFLGV---- 580
           +VG ++    E  ++ + + +SK  +  K  + I LD   + +     ++ + + +    
Sbjct: 428 VVGKLKPKKSEEVIKEV-KPVSKAPVLEKDDRVIELDHINEIISTGIYSMSKQVAIDYLK 486

Query: 581 --QRFDYGKAEESNRIGQVNGLAWTEVGG--DLLTIETQSMPGKGKLTQTGSL-GDVMQE 635
             +R+    + +  +IG ++GLA     G  D+  I T+ +  K   T   ++ GD+ + 
Sbjct: 487 NFKRYKNIVSNDKPKIGVIHGLAVLGADGLGDVTKIITKIVKSKHPRTNLLNISGDLAKH 546

Query: 636 SIQAA------------MTVVRSRAEKLGINPDFYEKKDIHVHVPEGATPKDGPSAGIAM 683
           SI  A            +++ +++ E    + D  E  +I++   +  +  DG SA  A 
Sbjct: 547 SITLASALSKKLVSDGTLSIAKAKGEVAKEDLDLAEH-EIYIQFSQSYSKIDGDSATAAA 605

Query: 684 CTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPKDNERDL 743
           C +++SSL   P+K +  +TG + L GE+L IGG+ EK+ AA   G K V+IP+ N  D+
Sbjct: 606 CLSIISSLLNIPLKQDFCITGSLDLNGEILAIGGVNEKINAAKEYGFKRVIIPQSNFEDV 665

Query: 744 EEIPDNVIADLQVLPVQWIDEVLKVALE 771
            + P+ +    +V+PV  ++E++ +A E
Sbjct: 666 ID-PEGI----EVIPVTRLEEIIPLAFE 688



 Score = 25.8 bits (55), Expect = 0.008
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 398 IGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLE 457
           IG+ P K +   A       +  +DEI  M  D++    +AL +        + N     
Sbjct: 221 IGTPPHKRVIIGAIHEAHKGILYVDEIKTMPVDVQDYILTALQDKQLAISGRNPNSSGAS 280

Query: 458 VDY-----DLSDVMFVATSNSMNIPGPLLDRMEV-IRLSGYTEDEKLNIAK-DHLVSKQV 510
           V+      DL+ +M     ++ N+  PLLDR++  + L    ++ + N  K    + +++
Sbjct: 281 VETNPIPCDLTLIMSGNMDDASNLRAPLLDRIDYKVVLKNKMDNNQENRDKLLQFIVQEL 340

Query: 511 ERNGLKP 517
           E N L+P
Sbjct: 341 ENNNLRP 347