Pairwise Alignments

Query, 619 a.a., peptidylprolyl isomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., peptidyl-prolyl cis-trans isomerase D (RefSeq) from Shewanella amazonensis SB2B

 Score =  409 bits (1050), Expect = e-118
 Identities = 239/619 (38%), Positives = 351/619 (56%), Gaps = 12/619 (1%)

Query: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGNNAAAKVGNAEISRGDFEQAYQ 60
           M++++REG      K IL L+ILSF F GV +YL S    AAA V   EI     EQA+Q
Sbjct: 1   MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYLGSSTEPAAATVNGEEIPVSALEQAFQ 60

Query: 61  NERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQL 120
           NE+ RM+ QLG+ F  L AD  Y+ S R+ VL+RM+ D LL+Q A+ +GLR+SDEQ++Q 
Sbjct: 61  NEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQA 120

Query: 121 ILEIPQFQSQGVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGEV 180
           I+E P FQ++G FD+  Y A LR+ G+    + + +R D+ R QL++AL GSEF L  E 
Sbjct: 121 IMEEPAFQTEGKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPSES 180

Query: 181 NLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELSA 240
               +L  QTRD+R + +  + F   +T++D+E   +Y  N ++F +PEQV + Y+ LSA
Sbjct: 181 KAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTLSA 240

Query: 241 DGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIE-GNDE----QKAQAILDELNA 295
             L  +VSV D  A+ YY EH+ +Y T E+R  +HIL+  G+DE     KA AI  +L A
Sbjct: 241 KSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKLQA 300

Query: 296 GADFATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYH 355
           GADFA LAK  S+D  S   GG L W E   MDPAF+ A F L EK Q S +VK+D+G+H
Sbjct: 301 GADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGL-EKDQYSAVVKTDYGFH 359

Query: 356 IIRLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAI 415
           II+L D++      + EV+  I  ++ ++ ALD FY+ Q +L   ++E  DSL EAAKA 
Sbjct: 360 IIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQKLADTSYEVPDSLTEAAKAT 419

Query: 416 SATVVHTDFISAEQAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFRP 475
              V  T   + E  P  ++ PA+++A  S +V   G+NS+V+++    V VVRV+E + 
Sbjct: 420 GLEVKSTGLFAREMPPAEISNPALIKAAFSEQVLLSGMNSDVVDLGDNQVAVVRVKEHKQ 479

Query: 476 ETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTALKAGETDLLAQKGVSFGELQMIDR 535
              LP DEVK+ +V +L++ K    A     +L+   KAGE   L  K     ++   DR
Sbjct: 480 AGTLPFDEVKAGIVARLTQDKANDAAKLQAQELLAKFKAGEALELTAK----AKVARFDR 535

Query: 536 SSPLANTVYAMVKPQEGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQIATQLERIGS 595
               +           G    + A  +   +VV++       +  A  + +A +L    +
Sbjct: 536 ELDPSIVNKGFQLAVGGADTISMASGY--ALVVLDKVNPAEGVEDALVQALAQRLSNQYT 593

Query: 596 QQDLAGVISVLRQNTDIEY 614
           +    GVI  L+   +I Y
Sbjct: 594 ELAYRGVIDSLKAKAEISY 612