Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., Transcription accessory protein (S1 RNA-binding domain) from Pseudomonas fluorescens FW300-N2E2

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E L+ LQ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K +K P E V  GD + 
Sbjct: 641 EDLKDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVK 700

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKV++ D  R RV L ++
Sbjct: 701 VKVMEVDIPRKRVGLSMR 718



 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +  + K I  P + V  GD V+V V+++
Sbjct: 649 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 336 DEERRRISLGLK 347
           D  R+R+ L ++
Sbjct: 707 DIPRKRVGLSMR 718



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVRE----FKKGDEISAVVLAVDA 424
           G + ++T+FG F+ +    DGLVH+S +S     E+ +++     K GD +   V+ VD 
Sbjct: 654 GVVTNVTNFGAFVDIGVHQDGLVHISALS-----EKFIKDPREAVKAGDVVKVKVMEVDI 708

Query: 425 ERERISLGIKQME 437
            R+R+ L ++  +
Sbjct: 709 PRKRVGLSMRMSD 721



 Score = 39.3 bits (90), Expect = 6e-07
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           + D + G ++ G VT V   GA +++    +G +  S +S   I+D    +  GD V+ K
Sbjct: 643 LKDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVK 702

Query: 505 FTGVDRKNRVINLSIKAKDEAEEQ 528
              VD   + + LS++  D   E+
Sbjct: 703 VMEVDIPRKRVGLSMRMSDTPGEK 726