Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., SSU ribosomal protein S1p from Pseudomonas fluorescens FW300-N2E2

 Score =  788 bits (2036), Expect = 0.0
 Identities = 399/558 (71%), Positives = 462/558 (82%), Gaps = 6/558 (1%)

Query: 1   MTESFAQLFEEFLNETQFQQGTIVKGTVVAIENG--YVLVDAGLKSESAIPAEQFKNAAG 58
           M+ESFA+LFEE L     Q G+I+ G +V I+    +V V AGLKSE+ IP EQF N AG
Sbjct: 1   MSESFAELFEESLKTLNLQAGSIITGVIVDIDYQARWVTVHAGLKSEALIPLEQFYNDAG 60

Query: 59  ELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKG 118
           EL + VG +V VALD+VEDGFGET+LSREKAKR E WIVLE A+     V G+INGKVKG
Sbjct: 61  ELNINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKG 120

Query: 119 GFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESES 178
           GFTV++NGIRAFLPGSLVDVRP+RDT HLE KELEFKVIKLDQKRNNVVVSRR+V+E+E+
Sbjct: 121 GFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRSVLEAEN 180

Query: 179 SVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG 238
           S ER+ LLE+LQEG +VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR+KHPSEIVNVG
Sbjct: 181 SAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVG 240

Query: 239 DEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEE 298
           DEI VKVLK+DR+R RVSLGLKQLGEDPWVAI  RYPE  +++ RVTNLTDYGCF E+EE
Sbjct: 241 DEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTARVTNLTDYGCFAELEE 300

Query: 299 GVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFA 358
           GVEGLVHVSEMDWTNKNIHPSKVV VGDEVEVMVLDIDEERRRISLG+KQCK+NPW+ F+
Sbjct: 301 GVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFS 360

Query: 359 EAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAV 418
               KGDK++G IKSITDFGIFIGL+GGIDGLVHLSDISWN  GEEAVR FKKGDE+  V
Sbjct: 361 GQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTV 420

Query: 419 VLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYI 478
           +L+VD ERERISLGIKQ+E+DPF+ YV +N KGA+V G V  VDAKGA I L D +E  +
Sbjct: 421 ILSVDPERERISLGIKQLESDPFSEYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATL 480

Query: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQ- 537
           +ASE+SRDR+EDA  +L  G++VEAK   VDRK+RVI LSIK+KD+AEE+E + +L  + 
Sbjct: 481 KASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSLRDKP 540

Query: 538 ---DEAAFGNAMADAFKA 552
              D AA    + D  +A
Sbjct: 541 ATSDIAAGPTTLGDLLRA 558