Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E L  L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K VK P E+V  GD + 
Sbjct: 641 EKLSDLEPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVK 700

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKV++ D  R RV L ++
Sbjct: 701 VKVMEVDIPRQRVGLSMR 718



 Score = 55.5 bits (132), Expect = 8e-12
 Identities = 77/327 (23%), Positives = 135/327 (41%), Gaps = 45/327 (13%)

Query: 40  AGLKSESAIPAEQFKNAAGELEVQVGSQVDVA------------LDAVEDGFGETQLSRE 87
           A + S S + A++F     +L+V +   V +A            +D    G G+ Q    
Sbjct: 418 ASVYSASELAAKEFP----DLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVS 473

Query: 88  KAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHL 147
           + K   +   L+   E+    +G+            ++G+ + L  ++V  R     A  
Sbjct: 474 QLKLARS---LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANG-AFK 529

Query: 148 ENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGA 207
              EL+ KV +L +K          V+  E+ ++   +        E   +VK +     
Sbjct: 530 SRSELK-KVPRLGEKTFEQAAGFLRVMNGENPLDASAV------HPETYPLVKRIAQDT- 581

Query: 208 FVDLGGVDGLLHITDMAWKRVKHPSEIVNVG------DEILVKVLKFDRDRTRVSLGLKQ 261
                G D    I D A+ +   P +  + G       +IL ++ K  RD  R      +
Sbjct: 582 -----GRDIRSLIGDSAFLKRLDPKQFTDEGFGLVTVSDILQELEKPGRD-PRPEFKTAE 635

Query: 262 LGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSK 320
             E   V        G  L G VTN+T++G FV+I    +GLVH+S +  + K +  P +
Sbjct: 636 FQEG--VEKLSDLEPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFVKDPYE 691

Query: 321 VVNVGDEVEVMVLDIDEERRRISLGLK 347
           VV  GD V+V V+++D  R+R+ L ++
Sbjct: 692 VVKAGDIVKVKVMEVDIPRQRVGLSMR 718



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423
           G  + G + ++T+FG F+ +    DGLVH+S +S     ++     K GD +   V+ VD
Sbjct: 649 GMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFV-KDPYEVVKAGDIVKVKVMEVD 707

Query: 424 AERERISLGIKQMENDPFNAYVSDNKKGALVNGT 457
             R+R+ L ++ M + P     +D  +G    G+
Sbjct: 708 IPRQRVGLSMR-MSDTP--GAKTDGPRGGQARGS 738