Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., S1 RNA-binding domain-containing protein from Synechocystis sp000284455 PCC 6803

 Score =  136 bits (343), Expect = 1e-36
 Identities = 87/275 (31%), Positives = 147/275 (53%), Gaps = 16/275 (5%)

Query: 3   ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFK-NAAGELE 61
           E FA L +++  +  F  G IV GTV ++E+   L+D G K+ + IP ++   N   + E
Sbjct: 15  EDFAALLDKY--DYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPE 72

Query: 62  --VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGG 119
             +Q     +  +   E+  G+  LS  + +   AW  + +   E ATV   +    +GG
Sbjct: 73  EVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGG 132

Query: 120 FTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIESES 178
             V + G+R F+PGS +  R  ++   L  ++L  K +++D++RN +V+S RRA++E + 
Sbjct: 133 ALVRIEGLRGFIPGSHISAREAKED--LVGEDLPLKFLEVDEERNRLVLSHRRALVERK- 189

Query: 179 SVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG 238
                  +  L+    V G V+ +  YGAF+D+GGV GLLHI++++   +  P  + NV 
Sbjct: 190 -------MNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVN 242

Query: 239 DEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKR 273
           DEI V ++  D +R R+SL  KQL  +P   +  R
Sbjct: 243 DEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDR 277



 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 15/252 (5%)

Query: 192 GTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDR 250
           G  V G V ++   GA +D+G      + I +M+  RV  P E++   +     +L  + 
Sbjct: 31  GDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDEN 90

Query: 251 DRTRVSLGLKQLGE-DPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM 309
           +  +++L ++++     W  + +   E   +   V      G  V IE G+ G +  S +
Sbjct: 91  EDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIE-GLRGFIPGSHI 149

Query: 310 DWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTG 369
                +   +K   VG+++ +  L++DEER R+ L  ++       +  E       V G
Sbjct: 150 -----SAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEV---AQVVVG 201

Query: 370 KIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVLAVDAERER 428
            ++ I  +G FI + GG+ GL+H+S+IS + +    +V  F   DEI  +++ +DAER R
Sbjct: 202 SVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSV--FNVNDEIKVMIIDLDAERGR 258

Query: 429 ISLGIKQMENDP 440
           ISL  KQ+E +P
Sbjct: 259 ISLSTKQLEPEP 270



 Score = 77.4 bits (189), Expect = 8e-19
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 22/231 (9%)

Query: 129 AFLPGSLVDVRPIRDTAHL--ENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELL 186
           A++P   + +  + D   +   N+  EF ++  + +   + +S R  IE   + ER   L
Sbjct: 56  AYIPIQEMSINRVDDPEEVLQPNETREFFILTDENEDGQLTLSIRR-IEYMRAWERVRQL 114

Query: 187 ETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVL 246
           +   E   V+  V      GA V + G+ G +  + ++ +  K       VG+++ +K L
Sbjct: 115 QA--EDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDL----VGEDLPLKFL 168

Query: 247 KFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLS----GRVTNLTDYGCFVEIEEGVEG 302
           + D +R R+ L  ++       A+ +R   G +++    G V  +  YG F++I  GV G
Sbjct: 169 EVDEERNRLVLSHRR-------ALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG-GVSG 220

Query: 303 LVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
           L+H+SE+   + +  P  V NV DE++VM++D+D ER RISL  KQ +  P
Sbjct: 221 LLHISEISHDHIDT-PHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 24/97 (24%), Positives = 46/97 (47%)

Query: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDR 510
           G +V GTV +++++GA I++      YI   E+S +R++D   +L   +  E      + 
Sbjct: 31  GDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDEN 90

Query: 511 KNRVINLSIKAKDEAEEQEVMATLNKQDEAAFGNAMA 547
           ++  + LSI+  +     E +  L  +D     N  A
Sbjct: 91  EDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFA 127