Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., RNA binding S1 from Synechococcus elongatus PCC 7942

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 12/251 (4%)

Query: 19  QQGTIVKGTVVAIENGYVLVDAGLKSESAIPA-EQFKNAAGELEVQVGSQVDVALDAVED 77
           Q+G +V+G V         +D G K+ + +P  E   +A  +LE  +    ++    + D
Sbjct: 26  QKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDLEAHLPKDEELEFLVIRD 85

Query: 78  GF--GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL 135
               G+  +S       +AW  + +  E   TV   + G  KGG T +L G+RAF+P S 
Sbjct: 86  QNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSH 145

Query: 136 VDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEV 195
           ++ +   D   L+ K L    +++++    +V+S R          R  L+  ++ G  +
Sbjct: 146 LNEK--EDLDSLKGKTLTVAFLEVNRADKKLVLSER-------QAARTALVREIEVGQLI 196

Query: 196 KGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRV 255
            G V  L  +G FVDLGG   LL I  ++ K V     I  +GD I   V+  D  + R+
Sbjct: 197 NGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRI 256

Query: 256 SLGLKQLGEDP 266
           SL  K L   P
Sbjct: 257 SLSTKVLENHP 267



 Score = 71.2 bits (173), Expect = 5e-17
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 13/253 (5%)

Query: 190 QEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKF 248
           Q+G  V+G V   +  GA++D+GG     L   + A   V      +   +E+   V++ 
Sbjct: 26  QKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDLEAHLPKDEELEFLVIRD 85

Query: 249 DRDRTRVSLGLKQLG-EDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVS 307
             +  +V++ L+ L  E  W  +A+    G  +  +VT     G   ++E G+   +  S
Sbjct: 86  QNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLE-GLRAFIPRS 144

Query: 308 EMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKV 367
            ++   +++   K    G  + V  L+++   +++ L  +Q          E    G  +
Sbjct: 145 HLN-EKEDLDSLK----GKTLTVAFLEVNRADKKLVLSERQAARTALVREIEV---GQLI 196

Query: 368 TGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERE 427
            GK+  +  FG+F+ L GG   L+ ++ IS     +     FK GD I A+V+A+D  + 
Sbjct: 197 NGKVTGLKPFGVFVDL-GGATALLPINQISQKFVADVGAI-FKIGDPIQALVVAIDNTKG 254

Query: 428 RISLGIKQMENDP 440
           RISL  K +EN P
Sbjct: 255 RISLSTKVLENHP 267