Pairwise Alignments
Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056
Subject, 307 a.a., 30S ribosomal protein S1 from Synechococcus elongatus PCC 7942
Score = 136 bits (342), Expect = 1e-36
Identities = 84/268 (31%), Positives = 144/268 (53%), Gaps = 16/268 (5%)
Query: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQF---KNAAGE 59
E FA L +++ + F G V GTV +E L+D G K+ + +P ++ + + E
Sbjct: 16 EDFAALLDQY--DYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPE 73
Query: 60 LEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGG 119
+Q + + + E+ G+ LS + + AW + + E ATV + +GG
Sbjct: 74 EVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGG 133
Query: 120 FTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIESES 178
V + G+R F+PGS + R ++ L +EL K +++D+ RN +V+S RRA++E +
Sbjct: 134 ALVRIEGLRGFIPGSHISTRKAKED--LVGEELPLKFLEVDEDRNRLVLSHRRALVERK- 190
Query: 179 SVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG 238
+ L+ G V G V+ + YGAF+D+GGV GLLHI++++ ++ P + NV
Sbjct: 191 -------MNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVN 243
Query: 239 DEILVKVLKFDRDRTRVSLGLKQLGEDP 266
DE+ V ++ D +R R+SL KQL +P
Sbjct: 244 DEVKVMIIDLDAERGRISLSTKQLEPEP 271
Score = 92.8 bits (229), Expect = 2e-23
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 13/251 (5%)
Query: 192 GTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDR 250
G V G V NL GA +D+G L + +M+ RV+ P E++ + +L +
Sbjct: 32 GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDEN 91
Query: 251 DRTRVSLGLKQLGE-DPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM 309
+ +++L ++++ W + + E + V G V IE G+ G + S +
Sbjct: 92 EDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHI 150
Query: 310 DWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTG 369
T K +K VG+E+ + L++DE+R R+ L ++ + E G+ V G
Sbjct: 151 S-TRK----AKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEV---GEVVVG 202
Query: 370 KIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERI 429
++ I +G FI + GG+ GL+H+S+IS + E F DE+ +++ +DAER RI
Sbjct: 203 AVRGIKPYGAFIDI-GGVSGLLHISEISHDHI-ETPHSVFNVNDEVKVMIIDLDAERGRI 260
Query: 430 SLGIKQMENDP 440
SL KQ+E +P
Sbjct: 261 SLSTKQLEPEP 271
Score = 85.5 bits (210), Expect = 3e-21
Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 19/269 (7%)
Query: 92 HEAWIVLEKAYE----EAATVIGIINGKVKGGFTVELNG-IRAFLPGSLVDVRPIRDTAH 146
HE + L Y+ TV+G + G +++ AFLP + + +
Sbjct: 15 HEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEE 74
Query: 147 -LENKEL-EFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTD 204
L+ E+ EF ++ + + + +S R IE + ER L+T E V+ V
Sbjct: 75 VLQPSEMREFFILSDENEDGQLTLSIRR-IEYMRAWERVRQLQT--EDATVRSEVFATNR 131
Query: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGE 264
GA V + G+ G + + ++ ++ K VG+E+ +K L+ D DR R+ L ++
Sbjct: 132 GGALVRIEGLRGFIPGSHISTRKAKEDL----VGEELPLKFLEVDEDRNRLVLSHRRALV 187
Query: 265 DPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324
+ + R G + G V + YG F++I GV GL+H+SE+ + P V NV
Sbjct: 188 ERKM---NRLEVGEVVVGAVRGIKPYGAFIDIG-GVSGLLHISEISHDHIET-PHSVFNV 242
Query: 325 GDEVEVMVLDIDEERRRISLGLKQCKANP 353
DEV+VM++D+D ER RISL KQ + P
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEP 271
Score = 72.8 bits (177), Expect = 2e-17
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 12/245 (4%)
Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDID 336
G + G V NL G ++I + V EM N+ P +V+ + E +L +
Sbjct: 32 GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMS-INRVESPEEVLQPSEMREFFILSDE 90
Query: 337 EERRRISLGLKQCK-ANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSD 395
E +++L +++ + W+ + Q + V ++ + G + +EG + G + S
Sbjct: 91 NEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEG-LRGFIPGSH 149
Query: 396 ISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVN 455
IS E+ V G+E+ L VD +R R+ L ++ + ++ + G +V
Sbjct: 150 ISTRKAKEDLV-----GEELPLKFLEVDEDRNRLVLSHRRALVE---RKMNRLEVGEVVV 201
Query: 456 GTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVI 515
G V + GA I++ GV G + SE+S D IE + NV D+V+ +D + I
Sbjct: 202 GAVRGIKPYGAFIDI-GGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRI 260
Query: 516 NLSIK 520
+LS K
Sbjct: 261 SLSTK 265
Score = 30.8 bits (68), Expect = 8e-05
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 451 GALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDR 510
G V GTV ++ +GA I++ ++ E+S +R+E +L + E +
Sbjct: 32 GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDEN 91
Query: 511 KNRVINLSIKAKDEAEEQEVMATLNKQD 538
++ + LSI+ + E + L +D
Sbjct: 92 EDGQLTLSIRRIEYMRAWERVRQLQTED 119