Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 778 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 195 VKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRT 253
           ++G+V N+T++GAFVD+G   DGL+HI+ ++ K V  P  +V  GD + VKV++ D +R 
Sbjct: 656 LEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERK 715

Query: 254 RVSLGLKQLGEDPWVAIAKR 273
           R+ L ++ L E P  A A +
Sbjct: 716 RIGLSMR-LDEKPQPAQAAK 734



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 12/101 (11%)

Query: 280 LSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDEVEVMVLDIDEE 338
           L G VTN+T++G FV++    +GLVH+S +  ++K +  P  VV  GD V+V V+++D E
Sbjct: 656 LEGVVTNVTNFGAFVDVGVHQDGLVHISSL--SDKFVSDPHTVVKAGDVVKVKVMEVDVE 713

Query: 339 RRRISLGLK---------QCKANPWQSFAEAQAKGDKVTGK 370
           R+RI L ++           K     +   AQAKG K   K
Sbjct: 714 RKRIGLSMRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSK 754



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S +S     +      K GD +   V+ VD ER+R
Sbjct: 658 GVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHT-VVKAGDVVKVKVMEVDVERKR 716

Query: 429 ISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAK 464
           I L ++ ++  P  A  +   KGA    T  A   K
Sbjct: 717 IGLSMR-LDEKPQPAQAAKG-KGAPAARTAQAKGGK 750



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 21/131 (16%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           V D K   ++ G VT V   GA +++    +G +  S +S   + D   ++  GD V+ K
Sbjct: 647 VRDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVK 706

Query: 505 FTGVDRKNRVINLSIKAKDEAEEQEVM------ATLNKQDE---------------AAFG 543
              VD + + I LS++  ++ +  +        A    Q +               AA G
Sbjct: 707 VMEVDVERKRIGLSMRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMG 766

Query: 544 NAMADAFKAAK 554
           NA ADAF   K
Sbjct: 767 NAFADAFAKMK 777