Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 708 a.a., 3' exoribonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 192 GTEVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDR 250
           G    G V  + D+GAFV+ LG  DGL+HI++++  RVK   ++VNVGD++ VK + FD 
Sbjct: 622 GVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRVKKVGDVVNVGDQVKVKCVGFD- 680

Query: 251 DRTRVSLGLKQLGE 264
           DR ++ L +KQ+ +
Sbjct: 681 DRGKIKLSMKQVDQ 694



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 11/115 (9%)

Query: 235 VNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPE-GHKLSGRVTNLTDYGCF 293
           +++ D+  +K+   D + T+ ++         W+      PE G   +G+V  + D+G F
Sbjct: 587 IDIEDDGTIKIASADAEATQRAVD--------WIKGIVAEPEIGVVYTGKVVKIMDFGAF 638

Query: 294 VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQ 348
           V      +GLVH+SE+   ++      VVNVGD+V+V  +  D +R +I L +KQ
Sbjct: 639 VNFLGTRDGLVHISELS-QDRVKKVGDVVNVGDQVKVKCVGFD-DRGKIKLSMKQ 691



 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
           D     V++ + G +  G V  +   GA +      +G +  SE+S+DR++    ++NVG
Sbjct: 610 DWIKGIVAEPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRVKKVGDVVNVG 669

Query: 499 DKVEAKFTGVDRKNRVINLSIKAKDE 524
           D+V+ K  G D + + I LS+K  D+
Sbjct: 670 DQVKVKCVGFDDRGK-IKLSMKQVDQ 694



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 10/74 (13%)

Query: 368 TGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVRE----FKKGDEISAVVLAVD 423
           TGK+  I DFG F+   G  DGLVH+S++S     ++ V++       GD++    +  D
Sbjct: 626 TGKVVKIMDFGAFVNFLGTRDGLVHISELS-----QDRVKKVGDVVNVGDQVKVKCVGFD 680

Query: 424 AERERISLGIKQME 437
            +R +I L +KQ++
Sbjct: 681 -DRGKIKLSMKQVD 693