Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., 30S ribosomal protein S1 from Phaeobacter inhibens DSM 17395

 Score =  560 bits (1444), Expect = e-164
 Identities = 278/550 (50%), Positives = 382/550 (69%), Gaps = 2/550 (0%)

Query: 3   ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEV 62
           E F  L  E       ++G++VKG V+AIE G  ++D G K E  +  ++F N     E+
Sbjct: 8   EEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFANPGEAPEI 67

Query: 63  QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTV 122
            VG +V+V L A E+  GE  +SRE A+R EAW  LEKAY +   V G I G+VKGGFTV
Sbjct: 68  SVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRVKGGFTV 127

Query: 123 ELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVER 182
           +L G  AFLPGS VDVRP+RD   L   +  F+++K+D++R N+VVSRRA++E   + +R
Sbjct: 128 DLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQR 187

Query: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
            E++  L EG  V G+VKN+T+YGAFVDLGGVDGLLH+TDMAW+RV HPSEI+++G+ + 
Sbjct: 188 AEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVK 247

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEG 302
           V+V+K +++  R+SLG+KQL EDPW  +  +YP      GRVTN+TDYG FVE+E GVEG
Sbjct: 248 VQVIKINKETHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEG 307

Query: 303 LVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQA 362
           LVHVSEM WT KN+HP K+V+   EV+VMVL+ID  +RR+SLGLKQ   NPW+ FAE   
Sbjct: 308 LVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHP 367

Query: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
           +G +V G++K+IT+FG+FIGL+G IDG+VHLSD+SW+  GE+A++ ++KGD +SAVV  V
Sbjct: 368 EGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEV 427

Query: 423 DAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASE 482
           D E+ERISL IK +  D F   V   K+G++V   VTA++  G  +E E G++ +IR S+
Sbjct: 428 DVEKERISLSIKALGGDKFAEAVGGVKRGSIVTVNVTAIEEGGIEVEYE-GMKSFIRRSD 486

Query: 483 VSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDE-AA 541
           +SRDR E      +VGDKV+ + T VD K R + LSIKA++ AEE+E +      D  A+
Sbjct: 487 LSRDRAEQRPERFSVGDKVDVRVTNVDGKTRRLGLSIKAREIAEEKEAVEQYGSSDSGAS 546

Query: 542 FGNAMADAFK 551
            G+ +  A K
Sbjct: 547 LGDILGAALK 556