Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E ++ L+    ++G+V N+T++GAFVD+G   DGL+HI+ +  K V  P  +V  GD + 
Sbjct: 644 EEIKDLKVEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVK 703

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDP 266
           VKV++ D +R R+SL ++ L E P
Sbjct: 704 VKVMEVDAERKRISLTMR-LDEKP 726



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 280 LSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDIDEE 338
           L G VTN+T++G FV+I    +GLVH+S +  T+K +  P  VV  GD V+V V+++D E
Sbjct: 655 LEGVVTNVTNFGAFVDIGVHQDGLVHISSL--TDKFVSDPHTVVKAGDVVKVKVMEVDAE 712

Query: 339 RRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
           R+RISL ++  +    +  +    KG    G+ K
Sbjct: 713 RKRISLTMRLDEKPGEKQMSHQGGKGQAKAGQGK 746



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S ++     +      K GD +   V+ VDAER+R
Sbjct: 657 GVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHT-VVKAGDVVKVKVMEVDAERKR 715

Query: 429 ISLGIK 434
           ISL ++
Sbjct: 716 ISLTMR 721