Pairwise Alignments
Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056
Subject, 481 a.a., 30S ribosomal protein S1 RpsA from Mycobacterium tuberculosis H37Rv
Score = 293 bits (750), Expect = 1e-83
Identities = 159/347 (45%), Positives = 223/347 (64%), Gaps = 5/347 (1%)
Query: 18 FQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQF--KNAAGELEV-QVGSQVDVALDA 74
F G IV+GT+V ++ VL+D G K+E IPA + K+ EV VG +V+ +
Sbjct: 33 FNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLT 92
Query: 75 VEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGS 134
ED G LS+++A+ AW +E E+ V G + VKGG +++ G+R FLP S
Sbjct: 93 KEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS 151
Query: 135 LVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTE 194
LV++R +RD KE+E K+I+LD+ RNNVV+SRRA +E S R E L LQ+GT
Sbjct: 152 LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTI 211
Query: 195 VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTR 254
KG+V ++ ++GAFVDLGGVDGL+H+++++WK + HPSE+V VGDE+ V+VL D DR R
Sbjct: 212 RKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRER 271
Query: 255 VSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNK 314
VSL LK EDPW A+ + G + G+VT L +G FV +EEG+EGLVH+SE+ +
Sbjct: 272 VSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
Query: 315 NIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQ 361
+ P +VV VGD+ V V+DID ERRRISL LKQ + + F A+
Sbjct: 332 EV-PDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPAK 377
Score = 154 bits (389), Expect = 7e-42
Identities = 104/298 (34%), Positives = 164/298 (55%), Gaps = 23/298 (7%)
Query: 151 ELEFKVIKLDQKRNNVVVSRRAVIESESSVERD-ELLETLQEGTE-VKGIVKNLTDYGAF 208
E+E V+ + K +++S++ + ER +E L+E E VKG V + G
Sbjct: 85 EVEALVLTKEDKEGRLILSKK-----RAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLI 139
Query: 209 VDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLG----LKQLGE 264
+D+G + G L + + +RV+ + G EI K+++ D++R V L L+Q
Sbjct: 140 LDIG-LRGFLPASLVEMRRVRDLQPYI--GKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196
Query: 265 DPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324
+ +G G V+++ ++G FV++ GV+GLVHVSE+ W + + HPS+VV V
Sbjct: 197 EVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHID-HPSEVVQV 254
Query: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLE 384
GDEV V VLD+D +R R+SL LK + +PW+ FA A G V GK+ + FG F+ +E
Sbjct: 255 GDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVE 314
Query: 385 GGIDGLVHLSDIS---WNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMEND 439
GI+GLVH+S+++ VP + GD+ V+ +D ER RISL +KQ D
Sbjct: 315 EGIEGLVHISELAERHVEVPDQVVA----VGDDAMVKVIDIDLERRRISLSLKQANED 368
Score = 152 bits (385), Expect = 2e-41
Identities = 108/378 (28%), Positives = 192/378 (50%), Gaps = 30/378 (7%)
Query: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
D+ ++ +G V+G + + +D+G +G++ +++ K P+E+V+VGDE+
Sbjct: 27 DKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEV 86
Query: 242 LVKVLKFDRDRTRVSLGLKQLG-EDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGV 300
VL + R+ L K+ E W I + + G V + G ++I G+
Sbjct: 87 EALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI--GL 144
Query: 301 EGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRRISLG----LKQCKANPWQ 355
G + S ++ +++ P +G E+E ++++D+ R + L L+Q ++
Sbjct: 145 RGFLPASLVEMRRVRDLQPY----IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRS 200
Query: 356 SFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISW---NVPGEEAVREFKKG 412
F KG G + SI +FG F+ L GG+DGLVH+S++SW + P E + G
Sbjct: 201 EFLNNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVV----QVG 255
Query: 413 DEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELED 472
DE++ VL VD +RER+SL +K + DP+ + + G +V G VT + GA + +E+
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE 315
Query: 473 GVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMA 532
G+EG + SE++ +E ++ VGD K +D + R I+LS+K +E +E
Sbjct: 316 GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEF-- 373
Query: 533 TLNKQDEAAFGNAMADAF 550
D A +G MAD++
Sbjct: 374 -----DPAKYG--MADSY 384