Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., RNA binding S1 domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 63.2 bits (152), Expect = 4e-14
 Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 187 ETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVKV 245
           + L+ G  + GIV N+T +GAFVD+G   DGL+H++ ++ + V+ P+E+V  G  + V+V
Sbjct: 677 DDLEPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPGRTVRVRV 736

Query: 246 LKFDRDRTRVSLGLK 260
           L+ DR R RVSL +K
Sbjct: 737 LEVDRARGRVSLTMK 751



 Score = 52.0 bits (123), Expect = 8e-11
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T +G FV+I    +GLVHVS++  +++ +  P++VV  G  V V VL++
Sbjct: 682 GMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQL--SDRFVRDPAEVVAPGRTVRVRVLEV 739

Query: 336 DEERRRISLGLK 347
           D  R R+SL +K
Sbjct: 740 DRARGRVSLTMK 751



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 259 LKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHP 318
           L+  G++P  A A  +PE + L  R+    D GC          L  +   D   + I P
Sbjct: 586 LRVRGDNPLDASAV-HPERYALVARMA--ADLGC---------ALADLLRRDDLRRRIRP 633

Query: 319 SKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVT------GKIK 372
            + V  G  +  +  DI  E  R     +   A P++ FAE     D +       G + 
Sbjct: 634 EQYVADGVGLPTLT-DILAELARPGRDPRPSFA-PFR-FAEGVHSPDDLEPGMVLPGIVT 690

Query: 373 SITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLG 432
           ++T FG F+ +    DGLVH+S +S     + A      G  +   VL VD  R R+SL 
Sbjct: 691 NVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPA-EVVAPGRTVRVRVLEVDRARGRVSLT 749

Query: 433 IKQME 437
           +K ++
Sbjct: 750 MKGVD 754