Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 75.9 bits (185), Expect = 5e-18
 Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 186 LETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVK 244
           LE L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD + V 
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 245 VLKFDRDRTRVSLGLKQ 261
           V+  D D+ RVSL +K+
Sbjct: 695 VMDIDFDKKRVSLSIKR 711



 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 50/326 (15%)

Query: 39  DAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVL 98
           D G++S  +I A + ++   EL         V +D    G G+ Q    + K  E+   L
Sbjct: 424 DVGIRSAISI-ARRLQDPLAEL---------VKIDPKSIGVGQYQHDMNQKKLSES---L 470

Query: 99  EKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIK 158
               E +   +G+            ++GI   +  ++V  R   +    E+++   KV K
Sbjct: 471 GAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRT--ENGKFESRKELLKVSK 528

Query: 159 LDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLL 218
           L +K          + E ++      L +      E   I +NL +          +  +
Sbjct: 529 LGKKAFEQCAGFLRIPEGKN------LFDNTGVHPESYKIAENLLN----------ELNI 572

Query: 219 HITDMAWKRVKHPSEIVNVG-------------DEILVKVLKFDRDRTRVSLGLKQLGED 265
            I D+  K++   SE V++              ++I+ ++ K  RD  R  L    L  D
Sbjct: 573 SIKDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRD-PREDLPKPVLRSD 631

Query: 266 PWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNV 324
             V   +   EG  L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V++V
Sbjct: 632 --VLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISV 687

Query: 325 GDEVEVMVLDIDEERRRISLGLKQCK 350
           GD V+VMV+DID +++R+SL +K+ K
Sbjct: 688 GDIVDVMVMDIDFDKKRVSLSIKRAK 713



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
           +G  + G +++I DFG FI +    DGL H+S+I+     +  +     GD +  +V+ +
Sbjct: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFI-KHPLDVISVGDIVDVMVMDI 698

Query: 423 DAERERISLGIKQ 435
           D +++R+SL IK+
Sbjct: 699 DFDKKRVSLSIKR 711



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           + D K+G ++ GTV  +   GA I++    +G    SE++   I+    +++VGD V+  
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 505 FTGVDRKNRVINLSIK 520
              +D   + ++LSIK
Sbjct: 695 VMDIDFDKKRVSLSIK 710