Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis JJ

 Score = 75.9 bits (185), Expect = 5e-18
 Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 186 LETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVK 244
           LE L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD + V 
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 245 VLKFDRDRTRVSLGLKQ 261
           V+  D D+ RVSL +K+
Sbjct: 695 VMDIDFDKKRVSLSIKR 711



 Score = 66.6 bits (161), Expect = 3e-15
 Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 276 EGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDEVEVMVLD 334
           EG  L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V++VGD V+VMV+D
Sbjct: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697

Query: 335 IDEERRRISLGLKQCK 350
           ID +++R+SL +K+ K
Sbjct: 698 IDFDKKRVSLSIKRAK 713



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 25/179 (13%)

Query: 273 RYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMV 332
           R PEG  L        + G   E  +  E L++  E++ + KNI   K+  + ++V++  
Sbjct: 542 RIPEGKNL------FDNTGVHPESYKIAENLLN--ELNISIKNIKEKKIDKISEKVDIEK 593

Query: 333 L------------DIDEERRRISLGLKQCKANPWQSF----AEAQAKGDKVTGKIKSITD 376
           L            DI +E  +    L++    P         E   +G  + G +++I D
Sbjct: 594 LAEKLDCGIPTLEDIIKELEKPGRDLREDLPKPVLRSDVLELEDLKEGMILKGTVRNIVD 653

Query: 377 FGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQ 435
           FG FI +    DGL H+S+I+     +  +     GD +  +V+ +D +++R+SL IK+
Sbjct: 654 FGAFIDIGVHHDGLAHISEIADRFI-KHPLDVISVGDIVDVMVMDIDFDKKRVSLSIKR 711



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           + D K+G ++ GTV  +   GA I++    +G    SE++   I+    +++VGD V+  
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 505 FTGVDRKNRVINLSIK 520
              +D   + ++LSIK
Sbjct: 695 VMDIDFDKKRVSLSIK 710