Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., ribosomal S1 synthesis/modification protein from Marinobacter adhaerens HP15

 Score =  803 bits (2074), Expect = 0.0
 Identities = 398/531 (74%), Positives = 456/531 (85%)

Query: 1   MTESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGEL 60
           M+ESFA LFEE L E   Q G+IV+GTVV ++N +V V+AGLKSE  IPA QF N  GEL
Sbjct: 1   MSESFADLFEESLKEIDMQPGSIVQGTVVDVDNDWVTVNAGLKSEGVIPASQFLNEKGEL 60

Query: 61  EVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGF 120
           E+ +G  VDVALDAVEDGFGET+LSREKAKR EAW VLEK++E    V GIINGKVKGGF
Sbjct: 61  EIAIGDVVDVALDAVEDGFGETRLSREKAKRAEAWKVLEKSFEAEEVVKGIINGKVKGGF 120

Query: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
           TV+L GIRAFLPGSLVDVRP+RDTAHLENKELEFKVIKLDQKRNNVVVSRRAV+E+E+S 
Sbjct: 121 TVDLAGIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVLEAENSA 180

Query: 181 ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240
           ER+ LLETL EG E+KGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR+KHPSEIVNVGDE
Sbjct: 181 EREALLETLTEGMEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDE 240

Query: 241 ILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGV 300
           I VKVLKFDR+R RVSLGLKQLGEDPWV I  RYPEG K+  RVTNLTDYGCF E+EEGV
Sbjct: 241 ISVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGSKVKARVTNLTDYGCFAELEEGV 300

Query: 301 EGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEA 360
           EGLVHVSEMDWTNKNIHPSKVV VGDEV+VM+LDIDEERRRISLG+KQC +NPW+ F+  
Sbjct: 301 EGLVHVSEMDWTNKNIHPSKVVQVGDEVDVMILDIDEERRRISLGIKQCVSNPWEDFSSN 360

Query: 361 QAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVL 420
             KGD+++GKIKSITDFGIFIGL+GGIDGLVHLSDISWN  GEEAVRE+KKGDE+  V+L
Sbjct: 361 FNKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVIL 420

Query: 421 AVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRA 480
           +VD ERERISLGIKQ+E+DPF  +V  N KG++V GTV+AVDAK ATI L D VE  ++A
Sbjct: 421 SVDPERERISLGIKQLESDPFAEFVQLNDKGSIVKGTVSAVDAKAATIALNDEVEAVLKA 480

Query: 481 SEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 531
           SE+SRDR+EDA   L  G++VEAK   +DRKNR+INLS+K+KD  ++++ +
Sbjct: 481 SEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQAL 531



 Score =  112 bits (280), Expect = 4e-29
 Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 13/220 (5%)

Query: 327 EVEVMVLDIDEERRRISLG----LKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIG 382
           E+E  V+ +D++R  + +     L+   +   ++  E   +G ++ G +K++TD+G F+ 
Sbjct: 151 ELEFKVIKLDQKRNNVVVSRRAVLEAENSAEREALLETLTEGMEIKGIVKNLTDYGAFVD 210

Query: 383 LEGGIDGLVHLSDISWNV---PGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMEND 439
           L GG+DGL+H++D++W     P E        GDEIS  VL  D ER R+SLG+KQ+  D
Sbjct: 211 L-GGVDGLLHITDMAWKRIKHPSEIV----NVGDEISVKVLKFDRERNRVSLGLKQLGED 265

Query: 440 PFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVS-RDRIEDASLILNVG 498
           P+        +G+ V   VT +   G   ELE+GVEG +  SE+   ++    S ++ VG
Sbjct: 266 PWVDIKGRYPEGSKVKARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVG 325

Query: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQD 538
           D+V+     +D + R I+L IK       ++  +  NK D
Sbjct: 326 DEVDVMILDIDEERRRISLGIKQCVSNPWEDFSSNFNKGD 365