Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 784 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 6/88 (6%)

Query: 280 LSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDEVEVMVLDIDEE 338
           L G VTN+T++G FV+I    +GLVH+S +  T+K I  P  VV  GD V+V V+++D E
Sbjct: 655 LEGVVTNVTNFGAFVDIGVHQDGLVHISSL--TDKFITDPHTVVKAGDVVKVKVMEVDVE 712

Query: 339 RRRISLGLKQCKA---NPWQSFAEAQAK 363
           RRRI L ++  +A   +  Q+ A AQ K
Sbjct: 713 RRRIGLSMRLDEAIDQSKTQTRAPAQGK 740



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E L+ L+    ++G+V N+T++GAFVD+G   DGL+HI+ +  K +  P  +V  GD + 
Sbjct: 644 EELKDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVK 703

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKV++ D +R R+ L ++
Sbjct: 704 VKVMEVDVERRRIGLSMR 721



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 30/139 (21%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           + D K   ++ G VT V   GA +++    +G +  S ++   I D   ++  GD V+ K
Sbjct: 646 LKDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVK 705

Query: 505 FTGVDRKNRVINLSIKAKDEAEEQEVMAT---------LNKQDE---------------- 539
              VD + R I LS++  DEA +Q    T          NK ++                
Sbjct: 706 VMEVDVERRRIGLSMRL-DEAIDQSKTQTRAPAQGKHQANKPNQQHKSAQHQSGRPAPKS 764

Query: 540 ----AAFGNAMADAFKAAK 554
               AA GNA ADAF   K
Sbjct: 765 VPVNAAMGNAFADAFAKLK 783



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S ++     +      K GD +   V+ VD ER R
Sbjct: 657 GVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHT-VVKAGDVVKVKVMEVDVERRR 715

Query: 429 ISLGIK 434
           I L ++
Sbjct: 716 IGLSMR 721