Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., ribosomal protein S1 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  917 bits (2369), Expect = 0.0
 Identities = 461/554 (83%), Positives = 504/554 (90%)

Query: 1   MTESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGEL 60
           MTESFA LFE+ L   +F+ G+IV+GTVVAIENG VLVDAGLKSES IPAEQFKNA G L
Sbjct: 1   MTESFADLFEQSLQTLEFRPGSIVRGTVVAIENGMVLVDAGLKSESPIPAEQFKNAQGVL 60

Query: 61  EVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGF 120
           E+ VG +VDVALD+VEDGFGETQLSREKAKRHEAWIVLEKAYE+A TVIGIINGKVKGGF
Sbjct: 61  EIAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGF 120

Query: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
           TVELNGIRAFLPGSLVDVRP+RDTAHLE KELEFKVIKLDQKRNNVVVSRRAVIESESS 
Sbjct: 121 TVELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSA 180

Query: 181 ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240
           ERD LLE LQEG  VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE
Sbjct: 181 ERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240

Query: 241 ILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGV 300
           I VKVLK+DR+RTRVSLGLKQLGEDPW+ I+KRYPE  KL+GRVTNLTDYGCFVEIEEGV
Sbjct: 241 INVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEEGV 300

Query: 301 EGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEA 360
           EGLVHVSEMDWTNKNIHPSKVVN+GDEVEV+VLDIDEERRRISLGLKQCK NPW  FA  
Sbjct: 301 EGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATR 360

Query: 361 QAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVL 420
             KGDKV+GKIKSITDFGIFIGL+GGIDGLVHLSDISWN  GE+AV E+KKGDEI AVVL
Sbjct: 361 YNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVL 420

Query: 421 AVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRA 480
           +VD ERERISLG+KQ E+DPFNAY++D KKG +V+GTV+AVDAKG T+EL D VEGYIR 
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRV 480

Query: 481 SEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDEA 540
           +++SR+RIEDAS + +VGD +EAKF GVDRKNR I+LSIKAKDEAEE+EVMATLNKQ++A
Sbjct: 481 ADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLNKQEDA 540

Query: 541 AFGNAMADAFKAAK 554
              NAMA+AFKAA+
Sbjct: 541 VISNAMAEAFKAAR 554