Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., transcription accessory protein from Klebsiella michiganensis M5al

 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E +  L  G  ++G V N+T++GAFVD+G   DGL+HI+ ++ K V+ P  +V  GD + 
Sbjct: 643 ETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVK 702

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKR 273
           VKV++ D  R R++L ++ L E P  + A+R
Sbjct: 703 VKVMEVDLPRKRIALTMR-LDEQPGDSNARR 732



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +  +NK +  P  VV  GD V+V V+++
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL--SNKFVEDPHTVVKAGDIVKVKVMEV 708

Query: 336 DEERRRISLGLKQCKANPWQSFAEAQAKGDKVTG 369
           D  R+RI+L ++     P  S A      D+  G
Sbjct: 709 DLPRKRIALTMR-LDEQPGDSNARRGGGNDRPQG 741



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S +S N   E+     K GD +   V+ VD  R+R
Sbjct: 656 GAVTNVTNFGAFVDIGVHQDGLVHISSLS-NKFVEDPHTVVKAGDIVKVKVMEVDLPRKR 714

Query: 429 ISLGIK 434
           I+L ++
Sbjct: 715 IALTMR 720



 Score = 39.7 bits (91), Expect = 4e-07
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           ++D   G ++ G VT V   GA +++    +G +  S +S   +ED   ++  GD V+ K
Sbjct: 645 MNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVK 704

Query: 505 FTGVDRKNRVINLSIKAKDEAEEQ------------------EVMATLNKQDEAAFGNAM 546
              VD   + I L+++  ++  +                   +      ++ + A  +AM
Sbjct: 705 VMEVDLPRKRIALTMRLDEQPGDSNARRGGGNDRPQGNRPAAKAAKPRGREAQPAGNSAM 764

Query: 547 ADAFKAAKGE 556
            DA  AA G+
Sbjct: 765 MDALAAAMGK 774