Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ribosomal protein S1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  512 bits (1319), Expect = e-149
 Identities = 258/550 (46%), Positives = 365/550 (66%), Gaps = 2/550 (0%)

Query: 4   SFAQLFEEFLNET--QFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELE 61
           SF    E +L+      ++G+IVKG +V + + YVLVD   KSE  I A +F++A G+L 
Sbjct: 18  SFESALENYLSSDFGDLEEGSIVKGEIVRLGDDYVLVDVNFKSEGQIAANEFRDANGDLI 77

Query: 62  VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFT 121
           + VG +VDV +    +  G   LS EKAKR + +  LE+  E+   + G I  ++KGG+T
Sbjct: 78  IGVGDRVDVFVVRKNEMEGTITLSYEKAKRMQLFDQLEEVQEKNGVIKGRIVRRIKGGYT 137

Query: 122 VELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVE 181
           V+L G+ AFLPGS VD+RP+ D   L N+E EF+V+K++++R+NV+VSRR ++E E   +
Sbjct: 138 VDLGGVEAFLPGSHVDLRPVPDMDALVNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSK 197

Query: 182 RDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
           R +LL TL+EG  VKG  KN+T+YG FVDLGG+DGLLHITDM+WKR++HP E+V++G E+
Sbjct: 198 RQDLLRTLEEGQVVKGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKELVSLGQEL 257

Query: 242 LVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVE 301
            +KVL FDRD  +VSLG+KQL  DPW  I  ++PEG +  G+VTNL DYG FVE+E GVE
Sbjct: 258 ELKVLSFDRDSQKVSLGMKQLVADPWQDITAKFPEGLRGQGKVTNLVDYGAFVELEPGVE 317

Query: 302 GLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQ 361
           GLVH+SEM WT K  HPS++V VGDEVEV++L +D +++RISLG+KQ K NPW+  AE  
Sbjct: 318 GLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMKQVKPNPWEVVAEKY 377

Query: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
            +G  + G IK+IT+FG+FIG+E GIDGL+H+SDISW          +K GD + A VL 
Sbjct: 378 PEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLT 437

Query: 422 VDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRAS 481
           VD E E+ +LG+KQ+  DP++   +    G LV G+VT +   G  +E+E+G+EG +  S
Sbjct: 438 VDQENEKFTLGVKQLAEDPWSRVPATYPVGTLVTGSVTNITDFGLFVEVEEGIEGLVHVS 497

Query: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDEAA 541
           E+S+ +I+  S I   G +++AK   V  + R + LSIK   + EE+             
Sbjct: 498 EISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQLKDEEERRKPKEFRSGSPEV 557

Query: 542 FGNAMADAFK 551
            G  + D  K
Sbjct: 558 GGQTLGDILK 567