Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 68.6 bits (166), Expect = 8e-16
 Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 171 RAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVK 229
           R   E  +  E    ++ +Q G E+ GIV N+T +GAFVD+G   DGL+H++ +A + V+
Sbjct: 627 RPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVR 686

Query: 230 HPSEIVNVGDEILVKVLKFDRDRTRVSLGLK 260
            P+E+V  G ++ V+VL  DR R R++L LK
Sbjct: 687 DPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G +L G VTN+T +G FV+I    +GLVHVS++   ++ +  P++VV  G +V V VLD+
Sbjct: 648 GMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL--ADRFVRDPAEVVAPGRKVRVRVLDV 705

Query: 336 DEERRRISLGLK 347
           D +R RI+L LK
Sbjct: 706 DRQRERINLTLK 717



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 356 SFAEAQAKGDKVT------GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREF 409
           +FAE   K D V       G + ++T FG F+ +    DGLVH+S ++     + A    
Sbjct: 634 AFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPA-EVV 692

Query: 410 KKGDEISAVVLAVDAERERISLGIK 434
             G ++   VL VD +RERI+L +K
Sbjct: 693 APGRKVRVRVLDVDRQRERINLTLK 717



 Score = 38.5 bits (88), Expect = 9e-07
 Identities = 22/76 (28%), Positives = 40/76 (52%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           V D + G  + G VT V   GA +++    +G +  S+++   + D + ++  G KV  +
Sbjct: 642 VDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVR 701

Query: 505 FTGVDRKNRVINLSIK 520
              VDR+   INL++K
Sbjct: 702 VLDVDRQRERINLTLK 717