Pairwise Alignments
Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056
Subject, 487 a.a., ribosomal protein S1, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Score = 266 bits (680), Expect = 1e-75
Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 10/434 (2%)
Query: 4 SFAQLFEEFLNETQ-FQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEV 62
SFA+L E T+ + G + +VAI + V V G K + I + + A G L
Sbjct: 16 SFAELLEAHAGGTRNVRPGDRISAAIVAITDDSVFVATGSKVDGVIDRRELEEADGSLPY 75
Query: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTV 122
VG +VD+ + AV E +LS+ + + A VLE+A + V G + G KGG+ V
Sbjct: 76 AVGDRVDLYVTAVNGQ--EIRLSKGLSGQGGA-AVLEEARDSGVPVEGRVTGTCKGGYNV 132
Query: 123 ELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVER 182
++ RAF PGS +D+ + D + + +F V +++Q N+VVSRRA++E E
Sbjct: 133 DVLRKRAFCPGSQIDLHQLEDAESVVGQTFQFLVTRVEQHGRNIVVSRRALLERERDAAL 192
Query: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
LE ++EG ++G V L +GAFV++ GVDG++HI+++ W RV E V+VGD +
Sbjct: 193 ATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVDGMVHISELTWSRVAQADEAVSVGDRV 252
Query: 242 LVKVLKFDR----DRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE 297
VKVL TR+SL +KQ G DPW + R + + +V L +G FVE+
Sbjct: 253 RVKVLGIGEAPKGKGTRISLSVKQAGGDPWETVGDRLEQDQVVPAKVVRLAPFGAFVEVL 312
Query: 298 EGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSF 357
GVEGLVHVSEM WT + P ++V VGD V V + ++D +RRISL L+ + +PW
Sbjct: 313 PGVEGLVHVSEMSWTRRVNKPEEIVAVGDAVNVKIKELDVAKRRISLSLRDAEGDPWADA 372
Query: 358 AEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISA 417
E A G +VTG ++ FG+F+ + G+ GL+ I + G ++ + GD ++
Sbjct: 373 TERFAPGTQVTGTVEKRAQFGLFVNIAPGLTGLLPEGIIKSSGQG-ASLSKLNAGDSVTL 431
Query: 418 VVLAVDAERERISL 431
V + AE RI+L
Sbjct: 432 TVRDISAETRRITL 445
Score = 129 bits (324), Expect = 3e-34
Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 7/248 (2%)
Query: 276 EGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDI 335
EG L G VT L +G FVEI GV+G+VH+SE+ W+ + + V+VGD V V VL I
Sbjct: 201 EGDVLEGTVTRLAPFGAFVEIAPGVDGMVHISELTWS-RVAQADEAVSVGDRVRVKVLGI 259
Query: 336 DEERR----RISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLV 391
E + RISL +KQ +PW++ + + V K+ + FG F+ + G++GLV
Sbjct: 260 GEAPKGKGTRISLSVKQAGGDPWETVGDRLEQDQVVPAKVVRLAPFGAFVEVLPGVEGLV 319
Query: 392 HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKG 451
H+S++SW + GD ++ + +D + RISL ++ E DP+ G
Sbjct: 320 HVSEMSWTRRVNKPEEIVAVGDAVNVKIKELDVAKRRISLSLRDAEGDPWADATERFAPG 379
Query: 452 ALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLI-LNVGDKVEAKFTGVDR 510
V GTV G + + G+ G + + + + ASL LN GD V +
Sbjct: 380 TQVTGTVEKRAQFGLFVNIAPGLTGLL-PEGIIKSSGQGASLSKLNAGDSVTLTVRDISA 438
Query: 511 KNRVINLS 518
+ R I L+
Sbjct: 439 ETRRITLA 446
Score = 97.8 bits (242), Expect = 8e-25
Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 31/365 (8%)
Query: 175 ESESSVERDELLET-------LQEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWK 226
E + S ELLE ++ G + + +TD FV G VDG++ ++
Sbjct: 10 ELDESASFAELLEAHAGGTRNVRPGDRISAAIVAITDDSVFVATGSKVDGVIDRRELEEA 69
Query: 227 RVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTN 286
P VGD + + V + R+S GL G+ + + G + GRVT
Sbjct: 70 DGSLPYA---VGDRVDLYVTAVNGQEIRLSKGLS--GQGGAAVLEEARDSGVPVEGRVTG 124
Query: 287 LTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG- 345
G V++ S++D + ++ V VG + +V +++ R I +
Sbjct: 125 TCKGGYNVDVLRK-RAFCPGSQIDL--HQLEDAESV-VGQTFQFLVTRVEQHGRNIVVSR 180
Query: 346 ---LKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--V 400
L++ + +F E +GD + G + + FG F+ + G+DG+VH+S+++W+
Sbjct: 181 RALLERERDAALATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVDGMVHISELTWSRVA 240
Query: 401 PGEEAVREFKKGDEISAVVLAVD----AERERISLGIKQMENDPFNAYVSDNKKGALVNG 456
+EAV GD + VL + + RISL +KQ DP+ ++ +V
Sbjct: 241 QADEAV---SVGDRVRVKVLGIGEAPKGKGTRISLSVKQAGGDPWETVGDRLEQDQVVPA 297
Query: 457 TVTAVDAKGATIELEDGVEGYIRASEVS-RDRIEDASLILNVGDKVEAKFTGVDRKNRVI 515
V + GA +E+ GVEG + SE+S R+ I+ VGD V K +D R I
Sbjct: 298 KVVRLAPFGAFVEVLPGVEGLVHVSEMSWTRRVNKPEEIVAVGDAVNVKIKELDVAKRRI 357
Query: 516 NLSIK 520
+LS++
Sbjct: 358 SLSLR 362