Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., ribosomal protein S1 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  562 bits (1448), Expect = e-164
 Identities = 278/550 (50%), Positives = 384/550 (69%), Gaps = 2/550 (0%)

Query: 3   ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEV 62
           E F  L +E        +G++VKG V+AIE G  ++D G K E  +  ++F N     E+
Sbjct: 8   EEFEALLQESFEIDTPTEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFANPGEAPEI 67

Query: 63  QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTV 122
           +VG +V+V LD VE+  GE  +SR+KA+R EAW  LEKAYE+ A V G I G+VKGGFTV
Sbjct: 68  EVGDEVEVFLDRVENARGEAVISRDKARREEAWDRLEKAYEDDARVEGAIFGRVKGGFTV 127

Query: 123 ELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVER 182
           +L G  AFLPGS VDVRP+RD   L   +  F+++K+D++R N+VVSRRA++E   + +R
Sbjct: 128 DLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQR 187

Query: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
            E++  L EG  V G+V+N+T+YGAFVDLGGVDGLLH+TDMAW+RV HPSEI+ +G+ + 
Sbjct: 188 AEVIGKLNEGDAVDGVVENITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAIGETVK 247

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEG 302
           V+V+K +++  R+SLG+KQL +DPW  +  +YP     +GRVTN+TDYG FVE+E GVEG
Sbjct: 248 VQVIKINKETHRISLGMKQLQDDPWNLVEGKYPLDSVHTGRVTNITDYGAFVELEPGVEG 307

Query: 303 LVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQA 362
           LVHVSEM WT KN+HP K+V+   EVEVMVL+ID  +RR+SLGLKQ   NPW+ FAE   
Sbjct: 308 LVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDTVKRRVSLGLKQTMRNPWEVFAETHP 367

Query: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
           +G +V G++K+IT+FG+FIGLE  IDG+VHLSD+SW+  GEEA++ ++KGD + AVV  V
Sbjct: 368 EGTEVEGEVKNITEFGLFIGLENDIDGMVHLSDLSWDQRGEEAIQNYRKGDVVQAVVSEV 427

Query: 423 DAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASE 482
           D E+ERISL +K +  D F   V   K+G+++   VTA++  G  +E E G++ +IR S+
Sbjct: 428 DVEKERISLSVKALGGDKFAEAVGGVKRGSIITVEVTAIEDGGIEVEYE-GMKSFIRRSD 486

Query: 483 VSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDE-AA 541
           +SRDR E       VGDKV+ + T VD K R + LSIKA++ AEE+E +      D  A+
Sbjct: 487 LSRDRAEQRPERFGVGDKVDVRVTNVDNKTRRLGLSIKAREIAEEKEAVEQYGSSDSGAS 546

Query: 542 FGNAMADAFK 551
            G+ +  A K
Sbjct: 547 LGDILGAALK 556