Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., Heat shock (predicted periplasmic) protein YciM, precursor from Xanthomonas campestris pv. campestris strain 8004

 Score =  265 bits (676), Expect = 2e-75
 Identities = 143/378 (37%), Positives = 210/378 (55%), Gaps = 2/378 (0%)

Query: 6   FLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQVD 65
           FL LPIAA  GW +G R  Q+    Q  ++S  Y  GLN LL++Q DKA++ F+ + ++D
Sbjct: 11  FLFLPIAALGGWIVGRRGGQRHGDTQVSRLSSTYFRGLNYLLNEQPDKAIELFLHIAELD 70

Query: 66  NETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVSGFLDR 125
            ET +T +ALG+LFR RGEVDRAIR+HQ L+ R+ LT  Q+  AL  L +DYM SG LDR
Sbjct: 71  KETFETQVALGHLFRRRGEVDRAIRLHQGLVQRADLTDQQRVQALLALGEDYMKSGLLDR 130

Query: 126 AEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIAHFYCE 185
           AE +F +L    +    AL+ L  IYQ  R+W KAI+ AT   ++  + M   I+ F CE
Sbjct: 131 AETVFTELAQLDQRAPQALRHLIGIYQAERDWEKAIDNATRYEEVTGEPMGKLISQFECE 190

Query: 186 LAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQDI 245
           LA   +     ++A+Q   +A Q D   VRA I  G++  +    +  +   E     D 
Sbjct: 191 LADRYRGVGKPDEALQAIARAYQADGTSVRAGILEGRIEAERGHDEAAVRAFERAARHDP 250

Query: 246 DFIGEVLNTLAECYHHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAAAQEIL 305
           +++ E++  L   Y  +G       FL     +  G++  L L QL+   +G+A A   L
Sbjct: 251 EYLPEIIPALMAAYRRVGDIAGARNFLSEMTEHYRGIAPVLALTQLMEAQDGVAPALAYL 310

Query: 306 TRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRCRKCGFSTH 365
            RQL   P+++G   LID  +AE  +     +L  L+ +  + L   P YRC +CGF   
Sbjct: 311 GRQLKDRPSVRGESALIDLTLAEGSD--PVGTLQDLKHITDQLLVRNPSYRCTRCGFGAK 368

Query: 366 SLYWHCPSCKNWGSIKPI 383
           + +W CPSCK WG++KP+
Sbjct: 369 THHWQCPSCKEWGTVKPL 386