Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., tetratricopeptide repeat protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  381 bits (978), Expect = e-110
 Identities = 194/389 (49%), Positives = 263/389 (67%), Gaps = 3/389 (0%)

Query: 1   MLEILFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIE 60
           MLEILFLLLPIAA YGWYMG RS +Q++  Q  ++SR Y TGLN LLS++SDKAVD FI 
Sbjct: 1   MLEILFLLLPIAAGYGWYMGRRSLRQNQYHQRKKLSRDYFTGLNYLLSNESDKAVDLFIS 60

Query: 61  LLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVS 120
           LL VD+ETIDTH++LG LFR RGEVDR+IRIHQNLI+R  LT +Q++ A+ +L KDYM +
Sbjct: 61  LLDVDDETIDTHMSLGALFRKRGEVDRSIRIHQNLIARPSLTTEQRDAAMMELGKDYMAA 120

Query: 121 GFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIA 180
           GF DRAE+IF  LI E +H E A  QL AIYQ  +EW KAI+    L K  ++ +K  +A
Sbjct: 121 GFYDRAEEIFLALIKEEDHSEDAENQLIAIYQIIKEWQKAIDITKGLSKKRQQSLKPIVA 180

Query: 181 HFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMV 240
           HFYC+LA  ++A + D K  +L  +AL++DP C RA ++L KL+L           L  +
Sbjct: 181 HFYCQLA--DEAKTADEKQ-KLLSQALKQDPNCGRALLTLAKLHLDEARLNDAAAMLTTL 237

Query: 241 LEQDIDFIGEVLNTLAECYHHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAA 300
            E D+    + +    + Y  L  ++     L + +AN  G S  + LA+ +     I  
Sbjct: 238 AEVDVLLFADGIKIARQLYADLNDKEGYRELLAQALANGGGASVVVALAEEMVARGQIKM 297

Query: 301 AQEILTRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRCRKC 360
           A+++L   L + P+MKGF  L+  H+A+AEEG+AK SLS L++LV +Q+K +P YRC+ C
Sbjct: 298 AEKMLLDNLYRQPSMKGFSELMKLHLAQAEEGQAKESLSLLEQLVEQQIKFRPAYRCKSC 357

Query: 361 GFSTHSLYWHCPSCKNWGSIKPIRGLDGE 389
           GF +H+LYWHCPSCK+WGSI  ++GLDGE
Sbjct: 358 GFPSHALYWHCPSCKSWGSIARVKGLDGE 386