Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., hypothetical protein from Pseudomonas fluorescens SBW25-INTG

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 11/200 (5%)

Query: 46  LLSDQSDKAVDHFIELLQVDNETIDTHLALGNLFRSRGEVDRAIR-IHQNLISRSGLTID 104
           L +D +D A+D   +LL  D  + + H  L     +   V  A R +H  L + + L + 
Sbjct: 14  LQADHNDGAIDALRQLLASDPHSAEAHALLAICLMNMCRVHAAKREVHLALAADAQLPLS 73

Query: 105 QKNLALQQLAKDYMVSGFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECA 164
             + A  Q+A   +       A++   QL+D      +  +    +YQ T    ++ E  
Sbjct: 74  --HYAAAQVA---IALRKFKLAQEHVSQLLDMEPLNPAYYRCQAELYQLTGRLAQSREPL 128

Query: 165 TALVKLGRKRMKVNIAHFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLY 224
              ++LG       +A     LA   +A S  ++A Q  ++ALQ DP    A + LG L 
Sbjct: 129 EKALQLGPDDPANLVA-----LAQFHRASSQWDQAYQFARQALQADPANAAAVVVLGHLL 183

Query: 225 LQNEDYQKTIDHLEMVLEQD 244
           L+  D     DH    L+++
Sbjct: 184 LREGDINGARDHAIWALQEN 203