Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., tetratricopeptide repeat protein from Parabacteroides merdae CL09T00C40

 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 75/337 (22%), Positives = 140/337 (41%), Gaps = 34/337 (10%)

Query: 28  KQKQSHQISRQYVTGLN-----LLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLFRSR 82
           K+K   ++ ++Y+TG          +D+ D+ +D F E    D    D  LALG L    
Sbjct: 2   KKKDISRLLQRYLTGHQEGKDAYFDADEIDELLDSFEE--SDDYTYYDEVLALG-LRLHP 58

Query: 83  GEVDRAIRIHQNLISR----SGLTI-------DQKNLALQQLAKDYMVSGFLDRAEKIFE 131
           G  D  IR  ++ +      S L +       D ++L + +L + Y++    D+     E
Sbjct: 59  GNPDLQIRQCKSYVYNEDYDSALALIESIAETDNQDLDMLRL-ECYVMQDSYDKVIGHVE 117

Query: 132 QLI-DEPEHRESALQQLTAIY---QQTREWHKAIECATALVKLGRKRMKVNIAHFYCELA 187
           +LI ++ E+ E+  + +  I    + T+E H         +  G      N+     EL 
Sbjct: 118 KLIANKCEYLETLFEYIAPILGDVEMTKEAHD-------FINRGLMLFPDNLI-LKDELC 169

Query: 188 MLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQDIDF 247
              + + +  +AI++  + + ++P       +LG+LY  + DY+K I+  +  L  D D 
Sbjct: 170 YNLEIEGDIKRAIEVCNELIDKNPYSNDYWFTLGRLYSISGDYEKAIEAFDFALTCD-DS 228

Query: 248 IGEVLNTLAEC-YHHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAAAQEILT 306
             E+    A C Y +   E+ +  +      +   +    +LA+   + E    A  +L 
Sbjct: 229 NEELKILKAYCLYMNENYEKAIEVYNDIATTDDIHIRITPLLAECYIKLENYEKAYVLLK 288

Query: 307 RQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQR 343
             L +N  +K     I+Y     E GR K +   L +
Sbjct: 289 ELLRQNRQLKDSSIYINYIRCCVETGRDKEASDALMQ 325



 Score = 31.6 bits (70), Expect = 5e-05
 Identities = 39/211 (18%), Positives = 87/211 (41%), Gaps = 20/211 (9%)

Query: 45  LLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTID 104
           L +++  +KA++ + ++   D+  I     L   +      ++A  + + L+ R    + 
Sbjct: 240 LYMNENYEKAIEVYNDIATTDDIHIRITPLLAECYIKLENYEKAYVLLKELL-RQNRQLK 298

Query: 105 QKNLALQQL------AKDYMVSGFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWH 158
             ++ +  +       +D   S  L +A ++F + I         L  L   Y +  + H
Sbjct: 299 DSSIYINYIRCCVETGRDKEASDALMQASRLFPKNI-------RILSLLALTYLENGDEH 351

Query: 159 KAIECA----TALVKLGRKRMKVNIAHFYCELAMLEKADSNDNKAIQLFKKALQEDPKCV 214
           KA+E      TAL ++  K+ +   + +     +  K D +  KA+Q +KK L+  P+  
Sbjct: 352 KAMEATERLFTALDQVEDKQQEDFESLYRAGQYLFMKGDID--KALQYYKKVLEGSPEMP 409

Query: 215 RATISLGKLYLQNEDYQKTIDHLEMVLEQDI 245
              + +   YL   D +   +H      +++
Sbjct: 410 YMHLHMAMAYLAKGDMKHFGEHYRQTSPEEL 440



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 26  QDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLFRSRGEV 85
           Q + KQ       Y  G  L +    DKA+ ++ ++L+   E    HL +   + ++G++
Sbjct: 366 QVEDKQQEDFESLYRAGQYLFMKGDIDKALQYYKKVLEGSPEMPYMHLHMAMAYLAKGDM 425