Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  361 bits (927), Expect = e-104
 Identities = 187/392 (47%), Positives = 265/392 (67%), Gaps = 9/392 (2%)

Query: 1   MLEILFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIE 60
           MLEILFLLLPIAA YGWYMG RS +  +  +  Q+SR Y TGLN LLS++SDKAVD FI 
Sbjct: 1   MLEILFLLLPIAAGYGWYMGRRSIRHKQNSKRKQLSRDYFTGLNFLLSNESDKAVDLFIS 60

Query: 61  LLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVS 120
           +L VD++TIDTHL+LG+LFR RGEVDR+IRIHQNLI+R  LT +Q+++A+ +L KDY+ +
Sbjct: 61  MLDVDDDTIDTHLSLGSLFRKRGEVDRSIRIHQNLIARPTLTTEQRDIAMMELGKDYLAA 120

Query: 121 GFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIA 180
           GF DRAE+IF  L+ + +H E A  QL AIYQ T++W KAI+   +L +  ++ +K   A
Sbjct: 121 GFYDRAEEIFLNLVRQEDHSEEAEDQLIAIYQVTKDWQKAIDIIKSLKRKRQQSLKHLQA 180

Query: 181 HFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMV 240
           H YCELA  ++A  ++ K ++   +A+++DP+C RA ++  KL+L  +++ +  + L  +
Sbjct: 181 HLYCELA--DEASDSELK-LKHLAQAIKQDPQCGRAMLTSAKLFLAQQEFGRAKEMLCRL 237

Query: 241 LEQDIDFIGEVLNTLAECY---HHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEG 297
            + DI+   E L    E Y     LG  ++L   LR  +   AG S  + LAQ +     
Sbjct: 238 KDADIELFPEALAIAKEVYQSTEDLGAYREL---LREALEQGAGASVAITLAQQMIIQGE 294

Query: 298 IAAAQEILTRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRC 357
              A++++   L ++PTMK F  L+   I  AE+G+AK SL+ L  LV +Q+K +P YRC
Sbjct: 295 TQDAEKLILDGLYRHPTMKSFQHLMKMQIQHAEDGQAKQSLNMLAELVEQQIKFRPSYRC 354

Query: 358 RKCGFSTHSLYWHCPSCKNWGSIKPIRGLDGE 389
            +CGF +H+LYWHCPSCK+WG+IK IRGLDGE
Sbjct: 355 IECGFPSHTLYWHCPSCKSWGTIKRIRGLDGE 386