Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Tetratricopeptide TPR_4 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 88/363 (24%), Positives = 143/363 (39%), Gaps = 47/363 (12%)

Query: 54  AVDHFIELLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQL 113
           A+     +++ D + ++ +LALGNL+R RG+++RA++I  +LI R GL    K  AL +L
Sbjct: 41  AIQELSRVVRNDPDAVEIYLALGNLYRLRGDIERAVQIRSSLIVRPGLDPQFKARALFEL 100

Query: 114 AKDYMVSGFLDRAEKIFEQ---LIDEPE---------HRES-ALQQLTAIYQ----QTRE 156
            +DY   G +DRA   F++   L  +PE         H +S A Q+  A Y     +  +
Sbjct: 101 GRDYRRGGVMDRALAAFDEARALGADPEQITFELALLHADSGAFQEAAAQYARLGFRPAQ 160

Query: 157 WHKAIECATALVKLGR---------KRMKV---NIAHFYCELAMLEKADSNDNKAIQLFK 204
            H  +  A  L + GR         K +KV    +  +   L M  +A     +A +L +
Sbjct: 161 AHYMVRHAEDLDRCGRPDEARTLLAKAVKVYPGAVEAWRARLVMAARA-GEWRRAGKLLR 219

Query: 205 KALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQDIDFIGEVLNTLAECYHHLGR 264
           + L+  P  +R  +  G L L+         H    +  D         T     H    
Sbjct: 220 EGLERVPASIRFLLLEGLLELE----APAPRHGNGAVTPDGSGANGAHGTNGA--HGTNG 273

Query: 265 EQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAAAQEILTRQLVKNPTMKGFYRLIDY 324
                   +RC    A + A+     L+ Q+ G         R+   N   K      D+
Sbjct: 274 AGTADFEEKRCATVLAAIEAQ--EPDLLLQYYGALFLLRCGNREEAGNWLAKAMVLRPDF 331

Query: 325 HIAEAE--------EGRAKASLSTLQRLVGEQLKVKPHYRCRKCGFSTHSLYWHCPSCKN 376
             A  E        +  +    S L+  +    KVK  + C  CG      +  CP C++
Sbjct: 332 WAARLELLSLSMEQQHLSPVFRSQLEYFIEHARKVK-RFVCGSCGLRREHTFSVCPRCRS 390

Query: 377 WGS 379
           W S
Sbjct: 391 WHS 393