Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., TPR domain protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 54.3 bits (129), Expect = 9e-12
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 111 QQLAKDYMVSGFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKL 170
           Q LA  Y     LD+A  + EQ++     ++  L  L  +Y +  ++ K I     L K 
Sbjct: 118 QGLASLYQQQNELDKAITLLEQMVVRFPAKQDPLFNLLDLYGRQEKYDKVISTLNRLEKH 177

Query: 171 GRKRMKVNIAHFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDY 230
             K  ++++  F   L M      +D KA Q  +  +QE P  +R  + LG +YLQN   
Sbjct: 178 MGKNEQLSMEKFRIYLQM-----KDDKKAFQEIESLVQEYPMDMRYQVILGDVYLQNGKK 232

Query: 231 QKTIDHLEMVLEQDIDFIGEVLNTLAECYHHLGREQ 266
           Q+  D  + VL  + D    +  ++A  Y   G+E+
Sbjct: 233 QEAYDVYQKVLAAEPDNPMAIF-SMASYYKQTGQEE 267